Evidence map›Paper›PMID 38605953›Full record

ArticleFrontiers in immunology2024

Development of a customizable mouse backbone spectral flow cytometry panel to delineate immune cell populations in normal and tumor tissues.

Ana Leda F Longhini, Inés Fernández-Maestre, Margaret C Kennedy, Matthew G Wereski, Shoron Mowla, Wenbin Xiao, Scott W Lowe, Ross L Levine, Rui Gardner

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Spectral Flow Cytometry: The Current State and Future of the Technology.International journal of molecular sciences · 2025
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Ana Leda F Longhini *Flow Cytometry Core Facility, Memorial Sloan Kettering Cancer Center (MSKCC), New York, NY, United States.
Inés Fernández-Maestre *Memorial Sloan Kettering Cancer Center, New York, NY, United States.
Margaret C KennedyLouis V. Gerstner Jr Graduate School of Biomedical Sciences, Memorial Sloan Kettering Cancer Center, New York, NY, United States.
Matthew G WereskiMemorial Sloan Kettering Cancer Center, New York, NY, United States.
Shoron MowlaMemorial Sloan Kettering Cancer Center, New York, NY, United States.
Wenbin XiaoMemorial Sloan Kettering Cancer Center, New York, NY, United States.
Scott W LoweDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY, United States.
Ross L Levine *Memorial Sloan Kettering Cancer Center, New York, NY, United States.
Rui Gardner *Flow Cytometry Core Facility, Memorial Sloan Kettering Cancer Center (MSKCC), New York, NY, United States.
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Synergistic role of signaling and epigenetics in leukemic transformationR35CA197594 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Ross L Levine · 2017 to 2026
$11.4M
Systematic characterization of cancer variants using single-cell functional genomicsR33CA267221 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI LOWE, SCOTT W., NORMAN, THOMAS MAXWELL · 2022 to 2024
$1.3M
Assessing lineage infidelity, oncogenic cooperativity and dependency in RUNX1-mutant acute myeloid leukemiaK08CA267058 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI XIAO, WENBIN · 2022 to 2025
$1.1M
Understanding the divergent functions of mutant p53F31CA275027 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI KENNEDY, MARGARET · 2022 to 2024
$143k
uNDERSTANDING AND TARGETING SENESCENCE IN CLONAL HEMATOPOIESISK00CA284253 · NCI · COLD SPRING HARBOR LABORATORY · PI FERNANDEZ MAESTRE, INES · 2025 to 2025
$101k
Identifying Inflammatory Mediators of Clonal HematopoiesisF99CA284253 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI FERNANDEZ MAESTRE, INES · 2023 to 2024
$75k
Howard Hughes Medical InstituteNCI NIH HHS F31 CA275027NCI NIH HHS F99 CA284253NCI NIH HHS K00 CA284253NCI NIH HHS K08 CA267058NCI NIH HHS P30 CA008748NCI NIH HHS R33 CA267221NCI NIH HHS R35 CA197594
6 · The paper itself

Abstract

Introduction: Methods: To address this issue, we designed a panel with 13 fixed markers that define the major immune populations -referred to as the backbone panel- that can be profiled in different tissues but with the option to incorporate up to seven additional fluorochromes, including any marker specific to the study in question. Results: This backbone panel maintains its resolution across different spectral flow cytometers and organs, both hematopoietic and non-hematopoietic, as well as tumors with complex immune microenvironments. Discussion: Having a robust backbone that can be easily customized with pre-validated drop-in fluorochromes saves time and resources and brings consistency and standardization, making it a versatile solution for immuno-oncology researchers. In addition, the approach presented here can serve as a guide to develop similar types of customizable backbone panels for different research questions requiring high-parameter flow cytometry panels.

Indexed as

Fluorescent DyesNeoplasmsAnimalsFlow CytometryMiceTumor MicroenvironmentFluorescent Dyesbackbone panelimmune cellsimmunophenotypingmousespectral flow cytometrytumor microenvironment (TME)

Identifiers

PMID38605953
PMCPMC11008467
OpenAlexW4393231367

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.