Evidence map›Paper›PMID 38605029›Full record

ArticleNature communications2024

Pathogenic mutations of human phosphorylation sites affect protein-protein interactions.

Trendelina Rrustemi, Katrina Meyer, Yvette Roske, Bora Uyar, Altuna Akalin, Koshi Imami, Yasushi Ishihama, Oliver Daumke, Matthias Selbach

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Trendelina RrustemiMax Delbrück Center (MDC), Robert-Rössle-Str. 10, 13125, Berlin, Germany.
Katrina MeyerMax Delbrück Center (MDC), Robert-Rössle-Str. 10, 13125, Berlin, Germany.ORCID http://orcid.org/0000-0002-8244-6887
Yvette RoskeMax Delbrück Center (MDC), Robert-Rössle-Str. 10, 13125, Berlin, Germany.
Bora UyarMax Delbrück Center (MDC), Robert-Rössle-Str. 10, 13125, Berlin, Germany.ORCID http://orcid.org/0000-0002-3170-4890
Altuna AkalinMax Delbrück Center (MDC), Robert-Rössle-Str. 10, 13125, Berlin, Germany.ORCID http://orcid.org/0000-0002-0468-0117
Koshi ImamiGraduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, 606-8501, Japan.ORCID http://orcid.org/0000-0002-7451-4982
Yasushi IshihamaGraduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, 606-8501, Japan.ORCID http://orcid.org/0000-0001-7714-203X
Oliver DaumkeMax Delbrück Center (MDC), Robert-Rössle-Str. 10, 13125, Berlin, Germany.ORCID http://orcid.org/0000-0002-6190-1414
Matthias SelbachMax Delbrück Center (MDC), Robert-Rössle-Str. 10, 13125, Berlin, Germany. matthias.selbach@mdc-berlin.de.ORCID http://orcid.org/0000-0003-2454-8751
Max Delbrück Center · DEKyoto University · JP

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) SP1831
6 · The paper itself

Abstract

Despite their lack of a defined 3D structure, intrinsically disordered regions (IDRs) of proteins play important biological roles. Many IDRs contain short linear motifs (SLiMs) that mediate protein-protein interactions (PPIs), which can be regulated by post-translational modifications like phosphorylation. 20% of pathogenic missense mutations are found in IDRs, and understanding how such mutations affect PPIs is essential for unraveling disease mechanisms. Here, we employ peptide-based interaction proteomics to investigate 36 disease-associated mutations affecting phosphorylation sites. Our results unveil significant differences in interactomes between phosphorylated and non-phosphorylated peptides, often due to disrupted phosphorylation-dependent SLiMs. We focused on a mutation of a serine phosphorylation site in the transcription factor GATAD1, which causes dilated cardiomyopathy. We find that this phosphorylation site mediates interaction with 14-3-3 family proteins. Follow-up experiments reveal the structural basis of this interaction and suggest that 14-3-3 binding affects GATAD1 nucleocytoplasmic transport by masking a nuclear localisation signal. Our results demonstrate that pathogenic mutations of human phosphorylation sites can significantly impact protein-protein interactions, offering insights into potential molecular mechanisms underlying pathogenesis.

Indexed as

Intrinsically Disordered ProteinsPeptidesBinding SitesEye ProteinsGene Expression RegulationHumansMutationPhosphorylationProtein BindingProtein Processing, Post-TranslationalEye ProteinsGATAD1 protein, humanIntrinsically Disordered ProteinsPeptides

Identifiers

PMID38605029
PMCPMC11009412
OpenAlexW4394714978

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.