Evidence map›Paper›PMID 38600891›Full record

ArticleCNS neuroscience & therapeutics2024

Deep-targeted gene sequencing reveals ARID1A mutation as an important driver of glioblastoma.

Menglin Xiao, Xiaoteng Cui, Can Xu, Lei Xin, Jixing Zhao, Shixue Yang, Biao Hong, Yanli Tan, Jie Zhang, Xiang Li and 3 more

Open access · goldAbstract read
In one paragraph

Article in CNS neuroscience & therapeutics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Clinicopathological and Genomic Analysis ofCancer management and research · 2026
    Article
  2. Targeting WEE1 to Overcome ARID1A Mutation-Driven Osimertinib Resistance in EGFR-Mutant Lung Cancer.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2025
    Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Menglin XiaoDepartment of Neurosurgery, Affiliated Hospital of Hebei University, Baoding, China.
Xiaoteng CuiLaboratory of Neuro-oncology, Tianjin Neurological Institute, Tianjin Medical University General Hospital, Tianjin, China.
Can XuDepartment of Neurosurgery, Affiliated Hospital of Hebei University, Baoding, China.
Lei XinDepartment of Neurosurgery, Affiliated Hospital of Hebei University, Baoding, China.
Jixing ZhaoLaboratory of Neuro-oncology, Tianjin Neurological Institute, Tianjin Medical University General Hospital, Tianjin, China.
Shixue YangLaboratory of Neuro-oncology, Tianjin Neurological Institute, Tianjin Medical University General Hospital, Tianjin, China.
Biao HongLaboratory of Neuro-oncology, Tianjin Neurological Institute, Tianjin Medical University General Hospital, Tianjin, China.
Yanli TanDepartment of Pathology, Affiliated Hospital of Hebei University, Baoding, China.
Jie ZhangDepartment of Pathology, Hebei University School of Basic Medical Sciences, Baoding, China.
Xiang LiDepartment of Pathology, Hebei University School of Basic Medical Sciences, Baoding, China.
Jie LiDepartment of Proteomics, Tianjin Enterprise Key Laboratory of Clinical Multi-omics, Tianjin, China.
Chunsheng KangLaboratory of Neuro-oncology, Tianjin Neurological Institute, Tianjin Medical University General Hospital, Tianjin, China.
Chuan FangDepartment of Neurosurgery, Affiliated Hospital of Hebei University, Baoding, China.ORCID 0000-0001-7695-2495
Tianjin Medical University General Hospital · CNAffiliated Hospital of Hebei University · CNHebei Medical University · CNTianjin Meteorological Bureau · CN

Funding

Basic Research Project of Baoding 2272P015Hebei Provincial Department of Science and Technology 223777115DNational Natural Science Foundation of China 82172660Natural Science Foundation of Hebei Province H2022201008Natural Science Foundation of Hebei Province H2022201062
6 · The paper itself

Abstract

aimsTo investigate the key factors influencing glioma progression and the emergence of treatment resistance by examining the intrinsic connection between mutations in DNA damage and repair-related genes and the development of chemoresistance in gliomas.

methodsWe conducted a comprehensive analysis of deep-targeted gene sequencing data from 228 glioma samples. This involved identifying differentially mutated genes across various glioma grades, assessing their functions, and employing I-TASSER for homology modeling. We elucidated the functional changes induced by high-frequency site mutations in these genes and investigated their impact on glioma progression.

resultsThe analysis of sequencing mutation results of deep targeted genes in integration revealed that ARID1A gene mutation occurs frequently in glioblastoma and alteration of ARID1A could affect the tolerance of glioma cells to temozolomide treatment. The deletion of proline at position 16 in the ARID1A protein affected the stability of binding of the SWI/SNF core subunit BRG1, which in turn affected the stability of the SWI/SNF complex and led to altered histone modifications in the CDKN1A promoter region, thereby affecting the biological activity of glioma cells, as inferred from modeling and protein interaction analysis.

conclusionThe ARID1A gene is a critical predictive biomarker for glioma. Mutations at the ARID1A locus alter the stability of the SWI/SNF complex, leading to changes in transcriptional regulation in glioma cells. This contributes to an increased malignant phenotype of GBM and plays a pivotal role in mediating chemoresistance.

Indexed as

DNA-Binding ProteinsGlioblastomaTranscription FactorsHumansMutationNuclear ProteinsTemozolomideARID1A protein, humanDNA-Binding ProteinsNuclear ProteinsTemozolomideTranscription FactorsARID1Achemoresistancedeep targeted sequencingDNA damage repairglioblastoma

Identifiers

PMID38600891
PMCPMC11007544
OpenAlexW4394720852

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.