Evidence map›Paper›PMID 38600449›Full record

ArticleBMC genomics2024

Long noncoding RNAs and mRNAs profiling in ovary during laying and broodiness in Taihe Black-Bone Silky Fowls (Gallus gallus Domesticus Brisson).

Yuting Tan, Yunyan Huang, Chunhui Xu, Xuan Huang, Shibao Li, Zhaozheng Yin

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yuting TanZijingang Campus, Animal Science College, Zhejiang University, Hangzhou, 310058, China.
Yunyan HuangZijingang Campus, Animal Science College, Zhejiang University, Hangzhou, 310058, China.
Chunhui XuZijingang Campus, Animal Science College, Zhejiang University, Hangzhou, 310058, China.
Xuan HuangZijingang Campus, Animal Science College, Zhejiang University, Hangzhou, 310058, China.
Shibao LiZijingang Campus, Animal Science College, Zhejiang University, Hangzhou, 310058, China.
Zhaozheng YinZijingang Campus, Animal Science College, Zhejiang University, Hangzhou, 310058, China. yzhzh@zju.edu.cn.
Zhejiang University · CN

Funding

Major Scientific and Technological cooperation between Zhejiang University and Taihe County Government 2021-KYY-517102-0023the Zhejiang Provincial "Fourteenth Five Year Plan" major scientific and technological special projects in agriculture 2021C02068-11
6 · The paper itself

Abstract

backgroundBroodiness significantly impacts poultry egg production, particularly notable in specific breeds such as the black-boned Silky, characterized by pronounced broodiness. An understanding of the alterations in ovarian signaling is essential for elucidating the mechanisms that influence broodiness. However, comparative research on the characteristics of long non-coding RNAs (lncRNAs) in the ovaries of broody chickens (BC) and high egg-laying chickens (GC) remains scant. In this investigation, we employed RNA sequencing to assess the ovarian transcriptomes, which include both lncRNAs and mRNAs, in eight Taihe Black-Bone Silky Fowls (TBsf), categorized into broody and high egg-laying groups. This study aims to provide a clearer understanding of the genetic underpinnings associated with broodiness and egg production.

resultsWe have identified a total of 16,444 mRNAs and 18,756 lncRNAs, of which 349 mRNAs and 651 lncRNAs exhibited significantly different expression (DE) between the BC and GC groups. Furthermore, we have identified the cis-regulated and trans-regulated target genes of differentially abundant lncRNA transcripts and have constructed an lncRNA-mRNA trans-regulated interaction network linked to ovarian follicle development. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation analyses have revealed that DE mRNAs and the target genes of DE lncRNAs are associated with pathways including neuroactive ligand-receptor interaction, CCR6 chemokine receptor binding, G-protein coupled receptor binding, cytokine-cytokine receptor interaction, and ECM-receptor interaction.

conclusionOur research presents a comprehensive compilation of lncRNAs and mRNAs linked to ovarian development. Additionally, it establishes a predictive interaction network involving differentially abundant lncRNAs and differentially expressed genes (DEGs) within TBsf. This significantly contributes to our understanding of the intricate interactions between lncRNAs and genes governing brooding behavior.

Indexed as

ChickensRNA, Long NoncodingAnimalsFemaleGene Expression ProfilingGene Regulatory NetworksOvaryRNA, MessengerRNA, Long NoncodingRNA, MessengerBroodinessEgg productionlncRNAOvarian follicle developmentTranscriptomes

Identifiers

PMID38600449
PMCPMC11005167
OpenAlexW4394689098

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.