Evidence map›Paper›PMID 38600345›Full record

ArticleEMBO reports2024

The phosphatase inhibitor LB-100 creates neoantigens in colon cancer cells through perturbation of mRNA splicing.

Matheus H Dias, Vladyslava Liudkovska, Jasmine Montenegro Navarro, Lisanne Giebel, Julien Champagne, Chrysa Papagianni, Onno B Bleijerveld, Arno Velds, Reuven Agami, René Bernards and 1 more

Abstract read
In one paragraph

Article in EMBO reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  4. Review
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  9. Article
  10. Targeting PP2A in cancer: an underrated option.Journal of experimental & clinical cancer research : CR · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Tumor-promoting effect and tumor immunity of SRSFs.Frontiers in cell and developmental biology · 2025
    Review
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Matheus H Dias *Division of Molecular Carcinogenesis and Oncode Institute, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Vladyslava Liudkovska *IMol Polish Academy of Sciences, Warsaw, Poland.ORCID 0000-0002-0078-1041
Jasmine Montenegro NavarroDivision of Oncogenomics and Oncode institute, The Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0001-5644-7758
Lisanne GiebelDivision of Oncogenomics and Oncode institute, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Julien ChampagneDivision of Oncogenomics and Oncode institute, The Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0001-8460-858X
Chrysa PapagianniDivision of Molecular Carcinogenesis and Oncode Institute, The Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0009-0002-0513-0763
Onno B BleijerveldProteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands.ORCID 0000-0002-9395-2347
Arno VeldsCentral Genomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands.ORCID 0000-0003-4333-8872
Reuven AgamiDivision of Oncogenomics and Oncode institute, The Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0002-2848-2473
René BernardsDivision of Molecular Carcinogenesis and Oncode Institute, The Netherlands Cancer Institute, Amsterdam, The Netherlands. r.bernards@nki.nl.ORCID 0000-0001-8677-3423
Maciej CieślaIMol Polish Academy of Sciences, Warsaw, Poland. m.ciesla@imol.institute.ORCID 0000-0002-8460-1991

Funding

Dutch Cancer Society Rene R BernardsDutch Ministry of Health, Welfare and Sport Rene R BernardsLixte Biotechnology Holdings Rene R BernardsNational Science Center UMO-2021/43/B/NZ3/01177National Science Center UMO-2022/46/E/NZ3/00141Oncode Institute Rene R BernardsX-omics Initiative Project 184.034.019
6 · The paper itself

Abstract

Perturbation of protein phosphorylation represents an attractive approach to cancer treatment. Besides kinase inhibitors, protein phosphatase inhibitors have been shown to have anti-cancer activity. A prime example is the small molecule LB-100, an inhibitor of protein phosphatases 2A/5 (PP2A/PP5), enzymes that affect cellular physiology. LB-100 has proven effective in pre-clinical models in combination with immunotherapy, but the molecular underpinnings of this synergy remain understood poorly. We report here a sensitivity of the mRNA splicing machinery to phosphorylation changes in response to LB-100 in colorectal adenocarcinoma. We observe enrichment for differentially phosphorylated sites within cancer-critical splicing nodes of U2 snRNP, SRSF and hnRNP proteins. Altered phosphorylation endows LB-100-treated colorectal adenocarcinoma cells with differential splicing patterns. In PP2A-inhibited cells, over 1000 events of exon skipping and intron retention affect regulators of genomic integrity. Finally, we show that LB-100-evoked alternative splicing leads to neoantigens that are presented by MHC class 1 at the cell surface. Our findings provide a potential explanation for the pre-clinical and clinical observations that LB-100 sensitizes cancer cells to immune checkpoint blockade.

Indexed as

Colonic NeoplasmsRNA SplicingAlternative SplicingAntigens, NeoplasmCell Line, TumorEnzyme InhibitorsHumansPhosphorylationPiperazinesProtein Phosphatase 2RNA, MessengerSerine-Arginine Splicing FactorsAntigens, NeoplasmEnzyme InhibitorsLB100PiperazinesProtein Phosphatase 2RNA, MessengerSerine-Arginine Splicing FactorsAlternative SplicingColorectal AdenocarcinomaCombination Therapies in CancerLB-100Neoantigen Formation

Identifiers

PMID38600345
PMCPMC11094086

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.