Evidence map›Paper›PMID 38600323›Full record

ArticleNature structural & molecular biology2024

Mechanism of autocatalytic activation during proteasome assembly.

Benjamin Velez, Richard M Walsh, Shaun Rawson, Aida Razi, Lea Adams, Erignacio Fermin Perez, Fenglong Jiao, Marie Blickling, Tamayanthi Rajakumar, Darlene Fung and 2 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Plasticity in the structure and assembly of proteasomes.The Journal of biological chemistry · 2026
    Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
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  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Benjamin Velez *Department of Pathology, Harvard Medical School and Brigham and Women's Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0002-9090-0699
Richard M Walsh *Harvard Cryo-Electron Microscopy Center for Structural Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-8939-8988
Shaun Rawson *Harvard Cryo-Electron Microscopy Center for Structural Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-2973-2630
Aida RaziDepartment of Pathology, Harvard Medical School and Brigham and Women's Hospital, Boston, MA, USA.
Lea AdamsDepartment of Pathology, Harvard Medical School and Brigham and Women's Hospital, Boston, MA, USA.
Erignacio Fermin PerezDepartment of Pathology, Harvard Medical School and Brigham and Women's Hospital, Boston, MA, USA.
Fenglong JiaoDepartment of Physiology and Biophysics, University of California-Irvine, Irvine, CA, USA.
Marie BlicklingDepartment of Pathology, Harvard Medical School and Brigham and Women's Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0003-0770-3449
Tamayanthi RajakumarDepartment of Pathology, Harvard Medical School and Brigham and Women's Hospital, Boston, MA, USA.
Darlene FungDepartment of Pathology, Harvard Medical School and Brigham and Women's Hospital, Boston, MA, USA.
Lan HuangDepartment of Physiology and Biophysics, University of California-Irvine, Irvine, CA, USA.ORCID http://orcid.org/0000-0002-3140-4687
John HannaDepartment of Pathology, Harvard Medical School and Brigham and Women's Hospital, Boston, MA, USA. jwhanna@bwh.harvard.edu.ORCID http://orcid.org/0000-0003-2964-1058

Funding

Supplement: Advancing Proteomics Technologies to Decipher the Ubiquitin-Proteasome SystemR35GM145249 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Lan Huang · 2022 to 2026
$3.2M
Structural and Functional Analysis of Proteasome Core Particle BiogenesisR01GM144367 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI HANNA, JOHN W · 2022 to 2025
$1.6M
Role of very long chain fatty acids in protein quality control and membrane homeostasisR01GM135337 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI HANNA, JOHN W · 2020 to 2023
$1.6M
NIGMS NIH HHS R01 GM135337NIGMS NIH HHS R01 GM144367NIGMS NIH HHS R35 GM145249
6 · The paper itself

Abstract

Many large molecular machines are too elaborate to assemble spontaneously and are built through ordered pathways orchestrated by dedicated chaperones. During assembly of the core particle (CP) of the proteasome, where protein degradation occurs, its six active sites are simultaneously activated via cleavage of N-terminal propeptides. Such activation is autocatalytic and coupled to fusion of two half-CP intermediates, which protects cells by preventing activation until enclosure of the active sites within the CP interior. Here we uncover key mechanistic aspects of autocatalytic activation, which proceeds through alignment of the β5 and β2 catalytic triad residues, respectively, with these triads being misaligned before fusion. This mechanism contrasts with most other zymogens, in which catalytic centers are preformed. Our data also clarify the mechanism by which individual subunits can be added in a precise, temporally ordered manner. This work informs two decades-old mysteries in the proteasome field, with broader implications for protease biology and multisubunit complex assembly.

Indexed as

Proteasome Endopeptidase ComplexCatalysisCatalytic DomainModels, MolecularProteolysisSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsProteasome Endopeptidase ComplexSaccharomyces cerevisiae Proteins

Identifiers

PMID38600323
PMCPMC11705615

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.