Evidence map›Paper›PMID 38600035›Full record

ArticleEnvironmental microbiology reports2024

Utilization of lasso peptides for biodegradation of polycyclic aromatic hydrocarbons.

Waltena Simpson, Robin L Brigmon, Daniel Howard, Makaela Jackson, Alex Kugler, Victoria Brown

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Waltena SimpsonDepartment of Biological and Physical Sciences, South Carolina State University, Orangeburg, South Carolina, USA.ORCID 0000-0002-7068-3877
Robin L BrigmonSavannah River National Laboratory, Aiken, South Carolina, USA.
Daniel HowardDepartment of Biological and Physical Sciences, South Carolina State University, Orangeburg, South Carolina, USA.
Makaela JacksonDepartment of Biological and Physical Sciences, South Carolina State University, Orangeburg, South Carolina, USA.
Alex KuglerSavannah River National Laboratory, Aiken, South Carolina, USA.ORCID 0000-0003-4504-3488
Victoria BrownDepartment of Biological and Physical Sciences, South Carolina State University, Orangeburg, South Carolina, USA.
South Carolina State University · USSavannah River National Laboratory · US

Funding

National Institute of Food and Agriculture SCX-311-21-17U.S. Department of Energy 89303321CEM000080
6 · The paper itself

Abstract

Many microbial genes involved in degrading recalcitrant environmental contaminants such as polycyclic aromatic hydrocarbons (PAHs) have been identified and characterized. However, all molecular mechanisms required for PAH utilization have not yet been elucidated. In this work, we demonstrate the proposed involvement of lasso peptides in the utilization of the PAH phenanthrene in Sphingomonas BPH. Transpositional mutagenesis of Sphingomonas BPH with the miniTn5 transposon yielded 3 phenanthrene utilization deficient mutants, #257, #1778, and #1782. In mutant #1782, Tn5 had inserted into the large subunit of the naph/bph dioxygenase gene. In mutant #1778, Tn5 had inserted into the B2 protease gene of a lasso peptide cluster. This finding is the first report on the role of lasso peptides in PAH utilization. Our studies also demonstrate that interruption of the lasso peptide cluster resulted in a significant increase in the amount of biosurfactant produced in the presence of glucose when compared to the wild-type strain. Collectively, these results suggest that the mechanisms Sphingomonas BPH utilizes to degrade phenanthrene are far more complex than previously understood and that the #1778 mutant may be a good candidate for bioremediation when glucose is applied as an amendment due to its higher biosurfactant production.

Indexed as

PhenanthrenesPolycyclic Aromatic HydrocarbonsBiodegradation, EnvironmentalGlucosePeptidesGlucosePeptidesphenanthrenePhenanthrenesPolycyclic Aromatic Hydrocarbons

Identifiers

PMID38600035
PMCPMC11006600
OpenAlexW4394723992

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.