Evidence map›Paper›PMID 38598855›Full record

ReviewAnnual review of biochemistry2024

Natural and Engineered Guide RNA-Directed Transposition with CRISPR-Associated Tn7-Like Transposons.

Shan-Chi Hsieh, Joseph E Peters

Abstract readReview
In one paragraph

Review in Annual review of biochemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Shan-Chi HsiehDepartment of Microbiology, Cornell University, Ithaca, New York, USA; email: joe.peters@cornell.edu.
Joseph E PetersDepartment of Microbiology, Cornell University, Ithaca, New York, USA; email: joe.peters@cornell.edu.

Funding

CRISPR/Cas-directed transposition in Tn7-like elementsR01GM129118 · NIGMS · CORNELL UNIVERSITY · PI PETERS, JOSEPH E · 2019 to 2022
$1.2M
CRISPR-Cas-directed transposition in Tn7-like elementsR35GM152260 · NIGMS · CORNELL UNIVERSITY · PI Joseph E Peters · 2024 to 2026
$1.1M
NIGMS NIH HHS R01 GM129118NIGMS NIH HHS R35 GM152260
6 · The paper itself

Abstract

CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR-associated nuclease) defense systems have been naturally coopted for guide RNA-directed transposition on multiple occasions. In all cases, cooption occurred with diverse elements related to the bacterial transposon Tn7. Tn7 tightly controls transposition; the transposase is activated only when special targets are recognized by dedicated target-site selection proteins. Tn7 and the Tn7-like elements that coopted CRISPR-Cas systems evolved complementary targeting pathways: one that recognizes a highly conserved site in the chromosome and a second pathway that targets mobile plasmids capable of cell-to-cell transfer. Tn7 and Tn7-like elements deliver a single integration into the site they recognize and also control the orientation of the integration event, providing future potential for use as programmable gene-integration tools. Early work has shown that guide RNA-directed transposition systems can be adapted to diverse hosts, even within microbial communities, suggesting great potential for engineering these systems as powerful gene-editing tools.

Indexed as

CRISPR-Cas SystemsDNA Transposable ElementsRNA, Guide, CRISPR-Cas SystemsTransposasesBacteriaClustered Regularly Interspaced Short Palindromic RepeatsGene EditingPlasmidsDNA Transposable ElementsRNA, Guide, CRISPR-Cas SystemsTransposasesgene editinggenetic engineeringhorizontal gene transfertarget-site selectiontransposition

Identifiers

PMID38598855
PMCPMC11406308

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.