Evidence map›Paper›PMID 38598626›Full record

ArticleScience advances2024

Noninvasive virtual biopsy using micro-registered optical coherence tomography (OCT) in human subjects.

Yonatan Winetraub, Aidan Van Vleck, Edwin Yuan, Itamar Terem, Jinjing Zhao, Caroline Yu, Warren Chan, Hanh Do, Saba Shevidi, Maiya Mao and 8 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  11. Journal of biomedical optics · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 2 countries.

Yonatan WinetraubDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-1827-8663
Aidan Van VleckDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.ORCID 0009-0005-4259-0293
Edwin YuanDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-8943-1581
Itamar TeremDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Jinjing ZhaoDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Caroline YuDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Warren ChanDepartment of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Hanh DoDepartment of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0002-5060-8191
Saba ShevidiDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Maiya MaoDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Jacqueline YuDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Megan HongDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Erick BlankenbergDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Kerri E RiegerDepartment of Pathology, Stanford University School of Medicine and Stanford Cancer Institute, Stanford, CA 94305, USA.ORCID 0000-0002-4436-2471
Steven ChuThe Bio-X Program, Stanford, CA 94305, USA.ORCID 0000-0002-4572-0154
Sumaira AasiDepartment of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0002-0865-6229
Kavita Y SarinDepartment of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0001-5363-3053
Adam de la ZerdaDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-5617-0194
Stanford Medicine · USStanford University · USChan Zuckerberg Initiative (United States) · USEnvironmental and Water Resources Engineering · IL

Funding

Pilot ProjectsU54CA151459 · NCI · STANFORD UNIVERSITY · PI GAMBHIR, SANJIV S · 2010 to 2014
$12.6M
Molecular Biophysics Training Program at StanfordT32GM008294 · NIGMS · STANFORD UNIVERSITY · PI HUANG, KERWYN C. · 1989 to 2019
$7.4M
OCT as a Platform for Non-Invasive Virtual H&E BiopsyDP5OD031858 · OD · STANFORD UNIVERSITY · PI WINETRAUB, YONATAN · 2021 to 2025
$1.9M
Repurposing systemic therapies to improve clinical outcomes in advanced basal cell cancerK23CA211793 · NCI · STANFORD UNIVERSITY · PI SARIN, KAVITA YANG · 2018 to 2022
$868k
NCI NIH HHS K23 CA211793NCI NIH HHS U54 CA151459NIGMS NIH HHS T32 GM008294NIH HHS DP5 OD031858
6 · The paper itself

Abstract

Histological hematoxylin and eosin-stained (H&E) tissue sections are used as the gold standard for pathologic detection of cancer, tumor margin detection, and disease diagnosis. Producing H&E sections, however, is invasive and time-consuming. While deep learning has shown promise in virtual staining of unstained tissue slides, true virtual biopsy requires staining of images taken from intact tissue. In this work, we developed a micron-accuracy coregistration method [micro-registered optical coherence tomography (OCT)] that can take a two-dimensional (2D) H&E slide and find the exact corresponding section in a 3D OCT image taken from the original fresh tissue. We trained a conditional generative adversarial network using the paired dataset and showed high-fidelity conversion of noninvasive OCT images to virtually stained H&E slices in both 2D and 3D. Applying these trained neural networks to in vivo OCT images should enable physicians to readily incorporate OCT imaging into their clinical practice, reducing the number of unnecessary biopsy procedures.

Indexed as

Neural Networks, ComputerTomography, Optical CoherenceBiopsyHumansImaging, Three-Dimensional

Identifiers

PMID38598626
PMCPMC11006228
OpenAlexW4394677501

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.