Evidence map›Paper›PMID 38598551›Full record

ArticlePLoS computational biology2024

Benchmarking multi-ancestry prostate cancer polygenic risk scores in a real-world cohort.

Yajas Shah, Scott Kulm, Jones T Nauseef, Zhengming Chen, Olivier Elemento, Kevin H Kensler, Ravi N Sharaf

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yajas ShahEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York City, New York, United States of America.ORCID 0000-0002-9692-4878
Scott KulmEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York City, New York, United States of America.
Jones T NauseefEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York City, New York, United States of America.
Zhengming ChenDepartment of Population Health Sciences, Weill Cornell Medicine, New York City, New York, United States of America.
Olivier ElementoEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York City, New York, United States of America.
Kevin H KenslerDepartment of Population Health Sciences, Weill Cornell Medicine, New York City, New York, United States of America.ORCID 0000-0001-7515-7270
Ravi N SharafEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York City, New York, United States of America.
Cornell University · US

Funding

Weill Cornell Medicine (WCM) SPORE in Prostate CancerP50CA211024 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LODA, MASSIMO · 2017 to 2021
$10.9M
Contributions of tumor molecular subtypes to prostate cancer racial disparitiesR00CA245900 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI KENSLER, KEVIN HUGHES · 2021 to 2023
$689k
NCI NIH HHS P50 CA211024NCI NIH HHS R00 CA245900
6 · The paper itself

Abstract

Prostate cancer is a heritable disease with ancestry-biased incidence and mortality. Polygenic risk scores (PRSs) offer promising advancements in predicting disease risk, including prostate cancer. While their accuracy continues to improve, research aimed at enhancing their effectiveness within African and Asian populations remains key for equitable use. Recent algorithmic developments for PRS derivation have resulted in improved pan-ancestral risk prediction for several diseases. In this study, we benchmark the predictive power of six widely used PRS derivation algorithms, including four of which adjust for ancestry, against prostate cancer cases and controls from the UK Biobank and All of Us cohorts. We find modest improvement in discriminatory ability when compared with a simple method that prioritizes variants, clumping, and published polygenic risk scores. Our findings underscore the importance of improving upon risk prediction algorithms and the sampling of diverse cohorts.

Indexed as

AlgorithmsBenchmarkingGenetic Predisposition to DiseaseMultifactorial InheritanceProstatic NeoplasmsCase-Control StudiesCohort StudiesComputational BiologyGenetic Risk ScoreGenome-Wide Association StudyHumansMalePolymorphism, Single NucleotideRisk AssessmentRisk Factors

Identifiers

PMID38598551
PMCPMC11034641
OpenAlexW4394674803

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.