Evidence map›Paper›PMID 38597673›Full record

ArticleNucleic acids research2024

KDM5-mediated transcriptional activation of ribosomal protein genes alters translation efficiency to regulate mitochondrial metabolism in neurons.

Matanel Yheskel, Hayden A M Hatch, Erika Pedrosa, Bethany K Terry, Aubrey A Siebels, Xiang Yu Zheng, Laura E R Blok, Michaela Fencková, Simone Sidoli, Annette Schenck and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 3 countries.

Matanel YheskelDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.ORCID 0000-0002-0913-3569
Hayden A M HatchDominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Erika PedrosaDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Bethany K TerryDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Aubrey A SiebelsDominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Xiang Yu ZhengDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Laura E R BlokDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, 6525 Nijmegen, GA, The Netherlands.
Michaela FenckováDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, 6525 Nijmegen, GA, The Netherlands.
Simone SidoliDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Annette SchenckDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, 6525 Nijmegen, GA, The Netherlands.
Deyou ZhengDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Herbert M LachmanDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Julie SecombeDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.ORCID 0000-0002-5826-7547
Albert Einstein College of Medicine · USRadboud University Nijmegen · NL

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Stable Isotope and Metabolomics CoreP60DK020541 · NIDDK · YESHIVA UNIVERSITY · PI FLEISCHER, NORMAN S. · 1986 to 2014
$29.8M
Bronx-Einstein Training in Teaching and Research (BETTR), an IRACDA programK12GM102779 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI Dianne Cox, Johanna Patricia Daily · 2012 to 2026
$9.2M
Medical Scientist Training ProgramT32GM149364 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Myles H. Akabas · 2023 to 2026
$7.5M
SUPPORT FOR THE ROSE F KENNEDY IDDRC P50P50HD105352 · NICHD · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Julie Secombe · 2021 to 2026
$7.0M
Distinct Modes of Gene Regulation by KDM5R01GM112783 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI SECOMBE, JULIE · 2015 to 2023
$3.0M
Orbitrap Exploris 480 Basic SystemS10OD030286 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI SIDOLI, SIMONE · 2021 to 2021
$600k
Advanced Confocal Microscope in a multi-user facilityS10OD023591 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI BAKER, NICHOLAS E · 2017 to 2017
$590k
Transcriptional regulation, neuronal development, and function of the mushroom body in a Drosophila model of intellectual disabilityF31NS110278 · NINDS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI HATCH, HAYDEN ALEXANDER MOSES · 2018 to 2022
$203k
Epigenetic and transcriptional consequences of Intellectual Disability-associated mutations in the histone lysine demethylase KDM5.F31GM146347 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI YHESKEL, MATANEL · 2022 to 2024
$143k
American Federation for Aging ResearchCzech Science Foundation 23-07810SDominick P. Purpura Department of NeuroscienceDutch Research Council 09150181910022EMBO IG-5310-2023Irma T. Hirschl TrustJunior Investigator in Neuroscience Research AwardNational Health and Medical Research Council APP1117394NCI NIH HHS P30 CA013330NICHD NIH HHS P50 HD105352NIDDK NIH HHS P60 DK020541NIGMS NIH HHS F31 GM146347NIGMS NIH HHS K12 GM102779NIGMS NIH HHS R01 GM112783NIGMS NIH HHS T32 GM149364NIH HHS S10 OD023591NIH HHS S10 OD030286NIH HHS T32GM149364NIH Office of the Director 1-S10-OD030286-01NINDS NIH HHS F31 NS110278
6 · The paper itself

Abstract

Genes encoding the KDM5 family of transcriptional regulators are disrupted in individuals with intellectual disability (ID). To understand the link between KDM5 and ID, we characterized five Drosophila strains harboring missense alleles analogous to those observed in patients. These alleles disrupted neuroanatomical development, cognition and other behaviors, and displayed a transcriptional signature characterized by the downregulation of many ribosomal protein genes. A similar transcriptional profile was observed in KDM5C knockout iPSC-induced human glutamatergic neurons, suggesting an evolutionarily conserved role for KDM5 proteins in regulating this class of gene. In Drosophila, reducing KDM5 changed neuronal ribosome composition, lowered the translation efficiency of mRNAs required for mitochondrial function, and altered mitochondrial metabolism. These data highlight the cellular consequences of altered KDM5-regulated transcriptional programs that could contribute to cognitive and behavioral phenotypes. Moreover, they suggest that KDM5 may be part of a broader network of proteins that influence cognition by regulating protein synthesis.

Indexed as

Drosophila ProteinsNeuronsRibosomal ProteinsAnimalsDrosophilaDrosophila melanogasterHistone DemethylasesHumansIntellectual DisabilityMitochondriaProtein BiosynthesisRibosomesTranscriptional ActivationDrosophila ProteinsHistone DemethylasesKDM5C protein, humanLid protein, DrosophilaRibosomal Proteins

Identifiers

PMID38597673
PMCPMC11194071
OpenAlexW4394675078

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.