Evidence map›Paper›PMID 38596739›Full record

ArticleJournal of applied crystallography2024

From solution to structure: empowering inclusive cryo-EM with a pre-characterization pipeline for biological samples.

Christoph Mueller-Dieckmann, Alessandro Grinzato, Grégory Effantin, Daphna Fenel, David Flot, Guy Schoehn, Gordon Leonard, Eaazhisai Kandiah

Open access · hybridAbstract read
In one paragraph

Article in Journal of applied crystallography, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Christoph Mueller-DieckmannStructural Biology, European Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, Grenoble 38000, France.
Alessandro GrinzatoStructural Biology, European Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, Grenoble 38000, France.
Grégory EffantinUniv. Grenoble Alpes, CNRS, CEA, IBS, Grenoble 38000, France.ORCID https://orcid.org/0000-0002-6957-0875
Daphna FenelUniv. Grenoble Alpes, CNRS, CEA, IBS, Grenoble 38000, France.
David FlotStructural Biology, European Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, Grenoble 38000, France.ORCID https://orcid.org/0000-0001-6639-7205
Guy SchoehnUniv. Grenoble Alpes, CNRS, CEA, IBS, Grenoble 38000, France.ORCID https://orcid.org/0000-0002-1459-3201
Gordon LeonardStructural Biology, European Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, Grenoble 38000, France.ORCID https://orcid.org/0000-0001-5030-0122
Eaazhisai KandiahStructural Biology, European Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, Grenoble 38000, France.ORCID https://orcid.org/0000-0002-9877-7621
European Synchrotron Radiation Facility · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In addressing the challenges faced by laboratories and universities with limited (or no) cryo-electron microscopy (cryo-EM) infrastructure, the ESRF, in collaboration with the Grenoble Institute for Structural Biology (IBS), has implemented the cryo-EM Solution-to-Structure (SOS) pipeline. This inclusive process, spanning grid preparation to high-resolution data collection, covers single-particle analysis and cryo-electron tomography (cryo-ET). Accessible through a rolling access route, proposals undergo scientific merit and technical feasibility evaluations. Stringent feasibility criteria demand robust evidence of sample homogeneity. Two distinct entry points are offered: users can either submit purified protein samples for comprehensive processing or initiate the pipeline with already vitrified cryo-EM grids. The SOS pipeline integrates negative stain imaging (exclusive to protein samples) as a first quality step, followed by cryo-EM grid preparation, grid screening and preliminary data collection for single-particle analysis, or only the first two steps for cryo-ET. In both cases, if the screening steps are successfully completed, high-resolution data collection will be carried out using a Titan Krios microscope equipped with a latest-generation direct electron counting detector coupled to an energy filter. The SOS pipeline thus emerges as a comprehensive and efficient solution, further democratizing access to cryo-EM research.

Indexed as

cryo-electron microscopycryo-electron tomographycryo-EMsingle-particle analysisSOS pipelinevitrification

Identifiers

PMID38596739
PMCPMC11001406
OpenAlexW4393180002

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.