ArticleBMC plant biology2024
Chloroplast genomes of Caragana tibetica and Caragana turkestanica: structures and comparative analysis.
Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed, 9 citations in OpenAlex.
- Enhanced valorization of Korshinsk peashrub (Caragana korshinskii Kom.) as ruminant feed via the selective ligninolysis by the white rot fungus Dichomitus squalens.Journal of animal science and biotechnology · 2026Article
- A Comprehensive Comparative Analysis and Phylogenetic Investigation of the Chloroplast Genome Sequences in FourCurrent issues in molecular biology · 2025Article
- Article
- Analysis of synonymous codon usage bias in the chloroplast genome of five Caragana.BMC plant biology · 2025Article
- Effects of simulated nibbling intensity on growth and physiological characteristics ofFrontiers in plant science · 2025Article
- Exploring the phylogenetic framework and trait evolution of Impatiens through chloroplast genome analysis.BMC plant biology · 2024Article
- Intracellular gene transfer (IGT) events from the mitochondrial genome to the plastid genome of the subtribe ferulinae drude (Apiaceae) and their implications.BMC plant biology · 2024Article
- Chloroplast Genomes Evolution and Phylogenetic Relationships ofInternational journal of molecular sciences · 2024Article
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe genus Caragana encompasses multiple plant species that possess medicinal and ecological value. However, some species of Caragana are quite similar in morphology, so identifying species in this genus based on their morphological characteristics is considerably complex. In our research, illumina paired-end sequencing was employed to investigate the genetic organization and structure of Caragana tibetica and Caragana turkestanica, including the previously published chloroplast genome sequence of 7 Caragana plants.
resultsThe lengths of C. tibetica and C. turkestanica chloroplast genomes were 128,433 bp and 129,453 bp, respectively. The absence of inverted repeat sequences in these two species categorizes them under the inverted repeat loss clade (IRLC). They encode 110 and 111 genes (4 /4 rRNA genes, 30 /31tRNA genes, and 76 /76 protein-coding genes), respectively. Comparison of the chloroplast genomes of C. tibetica and C. turkestanica with 7 other Caragana species revealed a high overall sequence similarity. However, some divergence was observed between certain intergenic regions (matK-rbcL, psbD-psbM, atpA-psbI, and etc.). Nucleotide diversity (π) analysis revealed the detection of five highly likely variable regions, namely rps2-atpI, accD-psaI-ycf4, cemA-petA, psbN-psbH and rpoA-rps11. Phylogenetic analysis revealed that C. tibetica's sister species is Caragana jubata, whereas C. turkestanica's closest relative is Caragana arborescens.
conclusionsThe present study provides worthwhile information about the chloroplast genomes of C. tibetica and C. turkestanica, which aids in the identification and classification of Caragana species.
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