Evidence map›Paper›PMID 38593851›Full record

ArticleProceedings. Biological sciences2024

Leaf gene expression trajectories during the growing season are consistent between sites and years in American beech.

U Uzay Sezen, Jessica E Shue, Samantha J Worthy, Stuart J Davies, Sean M McMahon, Nathan G Swenson

Open access · greenAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Proceedings. Biological sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

U Uzay SezenSmithsonian Environmental Research Center, 647 Contees Wharf Rd, Edgewater, MD 21037, USA.
Jessica E ShueSmithsonian Environmental Research Center, 647 Contees Wharf Rd, Edgewater, MD 21037, USA.
Samantha J WorthyDepartment of Evolution and Ecology, University of California, Davis, CA 95616, USA.
Stuart J DaviesForest Global Earth Observatory, Smithsonian Tropical Research Institute, Gamboa, Panama.
Sean M McMahonSmithsonian Environmental Research Center, 647 Contees Wharf Rd, Edgewater, MD 21037, USA.
Nathan G SwensonDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.
Smithsonian Environmental Research Center · USSmithsonian Institution · USUniversity of California, Davis · USUniversity of Notre Dame · US

Funding

US National Science Foundation DEB-1638488
6 · The paper itself

Abstract

Transcriptomics provides a versatile tool for ecological monitoring. Here, through genome-guided profiling of transcripts mapping to 33 042 gene models, expression differences can be discerned among multi-year and seasonal leaf samples collected from American beech trees at two latitudinally separated sites. Despite a bottleneck due to post-Columbian deforestation, the single nucleotide polymorphism-based population genetic background analysis has yielded sufficient variation to account for differences between populations and among individuals. Our expression analyses during spring-summer and summer-autumn transitions for two consecutive years involved 4197 differentially expressed protein coding genes. Using

Indexed as

FagusForestsHumansPlant LeavesSeasonsTranscriptomeTreesAmerican beechFagus grandifoliainteractomicsphenologyRNAseqtranscriptomics

Identifiers

PMID38593851
PMCPMC11003779
OpenAlexW4394623520

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.