Evidence map›Paper›PMID 38593794›Full record

ArticleStructure (London, England : 1993)2024

The cryo-EM structure of trypanosome 3-methylcrotonyl-CoA carboxylase provides mechanistic and dynamic insights into its enzymatic function.

Adrián Plaza-Pegueroles, Inna Aphasizheva, Ruslan Aphasizhev, Carlos Fernández-Tornero, Federico M Ruiz

Open access · greenAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Substrate-enhanced filamentation of 3-methylcrotonyl-CoA carboxylase inbioRxiv : the preprint server for biology · 2025
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Adrián Plaza-PeguerolesCentro de Investigaciones Biológicas Margarita Salas (CIB), CSIC, 28040 Madrid, Spain.
Inna AphasizhevaDepartment of Molecular and Cell Biology, Boston University Medical Campus (BUMC), Boston, MA 02118, USA.
Ruslan AphasizhevDepartment of Molecular and Cell Biology, Boston University Medical Campus (BUMC), Boston, MA 02118, USA.
Carlos Fernández-TorneroCentro de Investigaciones Biológicas Margarita Salas (CIB), CSIC, 28040 Madrid, Spain. Electronic address: cftornero@cib.csic.es.
Federico M RuizCentro de Investigaciones Biológicas Margarita Salas (CIB), CSIC, 28040 Madrid, Spain. Electronic address: fruiz@cib.csic.es.
Centro de Investigaciones Biológicas Margarita Salas · ESBoston University · US

Funding

Guide RNA Binding ComplexR01AI101057 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI Ruslan Afasizhev · 2012 to 2026
$6.0M
REPEAT-CONTAINING RNA BINDING PROTEINS OF TRYPANOSOMESR01AI113157 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI AFASIZHEVA, INNA · 2015 to 2024
$4.6M
Mitochondrial RNA Uridylation in TrypanosomesR01AI177658 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI Ruslan Afasizhev · 2024 to 2026
$2.1M
TRANSCRIPTIONAL CONTROL OF MITOCHONDRIAL GENE EXPRESSION IN TRYPANOSOMESR01AI152408 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI AFASIZHEV, RUSLAN · 2020 to 2024
$2.1M
NIAID NIH HHS R01 AI101057NIAID NIH HHS R01 AI113157NIAID NIH HHS R01 AI152408NIAID NIH HHS R01 AI177658
6 · The paper itself

Abstract

3-Methylcrotonyl-CoA carboxylase (MCC) catalyzes the two-step, biotin-dependent production of 3-methylglutaconyl-CoA, an essential intermediate in leucine catabolism. Given the critical metabolic role of MCC, deficiencies in this enzyme lead to organic aciduria, while its overexpression is linked to tumor development. MCC is a dodecameric enzyme composed of six copies of each α- and β-subunit. We present the cryo-EM structure of the endogenous MCC holoenzyme from Trypanosoma brucei in a non-filamentous state at 2.4 Å resolution. Biotin is covalently bound to the biotin carboxyl carrier protein domain of α-subunits and positioned in a non-canonical pocket near the active site of neighboring β-subunit dimers. Moreover, flexibility of key residues at α-subunit interfaces and loops enables pivoting of α-subunit trimers to partly reduce the distance between α- and β-subunit active sites, required for MCC catalysis. Our results provide a structural framework to understand the enzymatic mechanism of eukaryotic MCCs and to assist drug discovery against trypanosome infections.

Indexed as

Carbon-Carbon LigasesCatalytic DomainCryoelectron MicroscopyProtozoan ProteinsTrypanosoma brucei bruceiAcetyl-CoA CarboxylaseFatty Acid Synthase, Type IIHoloenzymesModels, MolecularProtein BindingProtein MultimerizationAcetyl-CoA Carboxylasebiotin carboxyl carrier proteinCarbon-Carbon LigasesFatty Acid Synthase, Type IIHoloenzymesmethylcrotonoyl-CoA carboxylaseProtozoan Proteins

Identifiers

PMID38593794
PMCPMC11246232
OpenAlexW4394579698

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.