Evidence map›Paper›PMID 38593082›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Two-way feedback between chromatin compaction and histone modification state explains

Ander Movilla Miangolarra, Daniel S Saxton, Zhi Yan, Jasper Rine, Martin Howard

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Stochastic modeling of epigenetic memory.NPJ systems biology and applications · 2026
    Review
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ander Movilla MiangolarraDepartment of Computational and Systems Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.ORCID 0000-0002-1064-7647
Daniel S SaxtonDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0001-7152-7780
Zhi YanDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Jasper RineDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0003-2297-9814
Martin HowardDepartment of Computational and Systems Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.ORCID 0000-0001-7670-0781
University of California, Berkeley · USJohn Innes Centre · GB

Funding

Epigenetic and Metabolic Regulation of Gene Silencing in SaccharomycesR35GM139488 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 2021 to 2023
$1.9M
NIGMS NIH HHS R35 GM139488
6 · The paper itself

Abstract

Compact chromatin is closely linked with gene silencing in part by sterically masking access to promoters, inhibiting transcription factor binding and preventing polymerase from efficiently transcribing a gene. However, a broader hypothesis suggests that chromatin compaction can be both a cause and a consequence of the locus histone modification state, with a tight bidirectional interaction underpinning bistable transcriptional states. To rigorously test this hypothesis, we developed a mathematical model for the dynamics of the

Indexed as

ChromatinSaccharomyces cerevisiae ProteinsFeedbackHeterochromatinHistone CodeHistonesSaccharomyces cerevisiaeSilent Information Regulator Proteins, Saccharomyces cerevisiaeChromatinHeterochromatinHistonesSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaechromatinepigeneticsgene regulationmathematical modelling

Identifiers

PMID38593082
PMCPMC11032488
OpenAlexW4394597687

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.