Evidence map›Paper›PMID 38592549›Full record

ArticlePlanta2024

Identification of microRNAs and their target genes associated with chasmogamous and cleistogamous flower development in Viola prionantha.

Qiaoxia Li, Zuoming Zhang, Kunpeng Li, Yuanyuan Zhu, Kun Sun, Chaoying He

Abstract read
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In one paragraph

Article in Planta, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Qiaoxia LiLife Science College, Northwest Normal University, Anning East Road 967, Anning, Lanzhou, 730070, Gansu, China. liqiaoxia8024@nwnu.edu.cn.
Zuoming ZhangLife Science College, Northwest Normal University, Anning East Road 967, Anning, Lanzhou, 730070, Gansu, China.
Kunpeng LiState Key Laboratory of Plant Diversity and Specialty Crops / State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Beijing, 100093, China.
Yuanyuan ZhuLife Science College, Northwest Normal University, Anning East Road 967, Anning, Lanzhou, 730070, Gansu, China.
Kun SunLife Science College, Northwest Normal University, Anning East Road 967, Anning, Lanzhou, 730070, Gansu, China.
Chaoying HeState Key Laboratory of Plant Diversity and Specialty Crops / State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Beijing, 100093, China. chaoying@ibcas.ac.cn.ORCID http://orcid.org/0000-0002-2550-0170
Northwest Normal University · CNBeijing Botanical Garden · CN

Funding

Innovative Research Group Project of the National Natural Science Foundation of China 31930007the national Natural Science Foundation of China 32160055the National Natural Science Foundation of China 32360059
6 · The paper itself

Abstract

MAIN

conclusionDifferentially expressed microRNAs were found associated with the development of chasmogamous and cleistogamous flowers in Viola prionantha, revealing potential roles of microRNAs in the developmental evolution of dimorphic flowers. In Viola prionantha, chasmogamous (CH) flowers are induced by short daylight, while cleistogamous (CL) flowers are triggered by long daylight. How environmental factors and microRNAs (miRNAs) affect dimorphic flower formation remains unknown. In this study, small RNA sequencing was performed on CH and CL floral buds at different developmental stages in V. prionantha, differentially expressed miRNAs (DEmiRNAs) were identified, and their target genes were predicted. In CL flowers, Viola prionantha miR393 (vpr-miR393a/b) and vpr-miRN3366 were highly expressed, while in CH flowers, vpr-miRN2005, vpr-miR172e-2, vpr-miR166m-3, vpr-miR396f-2, and vpr-miR482d-2 were highly expressed. In the auxin-activated signaling pathway, vpr-miR393a/b and vpr-miRN2005 could target Vpr-TIR1/AFB and Vpr-ARF2, respectively, and other DEmiRNAs could target genes involved in the regulation of transcription, e.g., Vpr-AP2-7. Moreover, Vpr-UFO and Vpr-YAB5, the main regulators in petal and stamen development, were co-expressed with Vpr-TIR1/AFB and Vpr-ARF2 and showed lower expression in CL flowers than in CH flowers. Some V. prionantha genes relating to the stress/defense responses were co-expressed with Vpr-TIR1/AFB, Vpr-ARF2, and Vpr-AP2-7 and highly expressed in CL flowers. Therefore, in V. prionantha, CH-CL flower development may be regulated by the identified DEmiRNAs and their target genes, thus providing the first insight into the formation of dimorphic flowers in Viola.

Indexed as

MicroRNAsViolaFlowersReproductionSequence Analysis, RNAMicroRNAsCleistogamyExpression variationFloral developmentMiRNAsTarget genesViola prionantha

Identifiers

PMID38592549
OpenAlexW4394619256

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.