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ArticleInflammation research : official journal of the European Histamine Research Society ... [et al.]2024

Macrophage-enriched novel functional long noncoding RNAs LRRC75A-AS1 and GAPLINC regulate polarization and innate immune responses.

Araceli Valverde, Raza Ali Naqvi, Afsar R Naqvi

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Article in Inflammation research : official journal of the European Histamine Research Society ... [et al.], 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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3 citing papers in PubMed.

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5 · Who and what money

Authors and funding

3 authors.

Araceli ValverdeDepartment of Periodontics, College of Dentistry, University of Illinois Chicago, Chicago, IL, 60612, USA. avalverd@uic.edu.
Raza Ali NaqviDepartment of Periodontics, College of Dentistry, University of Illinois Chicago, Chicago, IL, 60612, USA.
Afsar R NaqviDepartment of Periodontics, College of Dentistry, University of Illinois Chicago, Chicago, IL, 60612, USA. afsarraz@uic.edu.

Funding

NIH HHS RO3DE027147; RO1DE027980; RO1EY024710
6 · The paper itself

Abstract

introductionMacrophages (Mφs) are functionally dynamic immune cells that bridge innate and adaptive immune responses; however, the underlying epigenetic mechanisms that control Mφ plasticity and innate immune functions are not well elucidated.

objectiveTo identify novel functions of macrophage-enriched lncRNAs in regulating polarization and innate immune responses.

methodsTotal RNA isolated from differentiating monocyte-derived M1 and M2 Mφs was profiled for lncRNAs expression using RNAseq. Impact of LRRC75A-AS1, GAPLINC and AL139099.5 knockdown was examined on macrophage differentiation, polarization markers, phagocytosis, and antigen processing by flow cytometry and florescence microscopy. Cytokine profiles were examined by multiplex bead array and cytoskeletal signaling pathway genes were quantified by PCR-based array. Gingival biopsies were collected from periodontally healthy and diseased subjects to examine lncRNAs, M1/M2 marker expression.

resultsTranscriptome profiling of M1 and M2 Mφs identified thousands of differentially expressed known and novel lncRNAs. We characterized three Mφ-enriched lncRNAs LRRC75A-AS1, GAPLINC and AL139099.5 in polarization and innate immunity. Knockdown of LRRC75A-AS1 and GAPLINC downregulated the Mφ differentiation markers and skewed Mφ polarization by decreasing M1 markers without a significant impact on M2 markers. LRRC75A-AS1 and GAPLINC knockdown also attenuated bacterial phagocytosis, antigen processing and inflammatory cytokine secretion in Mφs, supporting their functional role in potentiating innate immune functions. Mechanistically, LRRC75A-AS1 and GAPLINC knockdown impaired Mφ migration by downregulating the expression of multiple cytoskeletal signaling pathways suggesting their critical role in regulating Mφ migration. Finally, we showed that LRRC75A-AS1 and GAPLINC were upregulated in periodontitis and their expression correlates with higher M1 markers suggesting their role in macrophage polarization in vivo.

conclusionOur results show that polarized Mφs acquire a unique lncRNA repertoire and identified many previously unknown lncRNA sequences. LRRC75A-AS1 and GAPLINC, which are induced in periodontitis, regulate Mφ polarization and innate immune functions supporting their critical role in inflammation.

Indexed as

Immunity, InnateMacrophagesRNA, Long NoncodingCell DifferentiationCells, CulturedCytokinesGingivaHumansPeriodontitisPhagocytosisCytokinesRNA, Long NoncodingImmunityLong noncoding RNAMacrophage polarizationPeriodontal inflammationPhagocytosis

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.