Evidence map›Paper›PMID 38592238›Full record

ArticleThe journal of physical chemistry. B2024

Assessing Weak Anion Binding to Small Peptides.

Corinne L D Gibb, Thien H Tran, Bruce C Gibb

Open access · hybridAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Anion-Binding Properties of Short Linear Homopeptides.International journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Corinne L D GibbDepartment of Chemistry, Tulane University School of Science and Engineering, New Orleans, Louisiana 70118, United States.
Thien H TranDepartment of Chemistry, Tulane University School of Science and Engineering, New Orleans, Louisiana 70118, United States.ORCID 0009-0001-9359-5829
Bruce C GibbDepartment of Chemistry, Tulane University School of Science and Engineering, New Orleans, Louisiana 70118, United States.ORCID 0000-0002-4478-4084
Tulane University · US

Funding

Ion-Ion Interactions and the Reverse Hofmeister EffectR01GM125690 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI GIBB, BRUCE C · 2018 to 2021
$1.7M
NIGMS NIH HHS R01 GM125690
6 · The paper itself

Abstract

Since Hofmeister's seminal studies in the late 19th century, it has been known that salts and buffers can drastically affect the properties of peptides and proteins. These Hofmeister effects can be conceived of in terms of three distinct phenomena/mechanisms: water-salt interactions that indirectly induce the salting-out of a protein by water sequestration by the salt, and direct salt-protein interactions that can either salt-in or salt-out the protein. Unfortunately, direct salt-protein interactions responsible for Hofmeister effects are weak and difficult to quantify. As such, they are frequently construed of as being nonspecific. Nevertheless, there has been considerable effort to better specify these interactions. Here, we use pentapeptides to demonstrate the utility of the H-dimension of nuclear magnetic resonance (NMR) spectroscopy to assess anion binding using N-H signal shifts. We qualify binding using these, demonstrating the upfield shifts induced by anion association and revealing how they are much larger than the corresponding downfield shifts induced by magnetic susceptibility and other ionic strength change effects. We also qualify binding in terms of how the pattern of signal shifts changes with point mutations. In general, we find that the observed upfield shifts are small compared with those induced by anion binding to amide-based hosts, and MD simulations suggest that this is so. Thus, charge-diffuse anions associate mostly with the nonpolar regions of the peptide rather than directly interacting with the amide N-H groups. These findings reveal the utility of

Indexed as

PeptidesProteinsAmidesAnionsSodium ChlorideWaterAmidesAnionsPeptidesProteinsSodium ChlorideWater

Identifiers

PMID38592238
PMCPMC11033870
OpenAlexW4394602813

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.