Evidence map›Paper›PMID 38590949›Full record

ReviewBiophysical reports2024

Blind instrument response function identification from fluorescence decays.

Adrián Gómez-Sánchez, Olivier Devos, Raffaele Vitale, Michel Sliwa, Damir Sakhapov, Jörg Enderlein, Anna de Juan, Cyril Ruckebusch

Abstract readReview
In one paragraph

Review in Biophysical reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Adrián Gómez-SánchezChemometrics Group, Universitat de Barcelona, Barcelona, Spain.
Olivier DevosUniversité Lille, CNRS, UMR 8516, Laboratoire Avancé de Spectroscopie pourles Intéractions la Réactivité et l'Environnement (LASIRE), Lille, France.
Raffaele VitaleUniversité Lille, CNRS, UMR 8516, Laboratoire Avancé de Spectroscopie pourles Intéractions la Réactivité et l'Environnement (LASIRE), Lille, France.
Michel SliwaUniversité Lille, CNRS, UMR 8516, Laboratoire Avancé de Spectroscopie pourles Intéractions la Réactivité et l'Environnement (LASIRE), Lille, France.
Damir SakhapovIII. Institute of Physics - Biophysics, Georg-August Universität, Göttingen, Germany.
Jörg EnderleinIII. Institute of Physics - Biophysics, Georg-August Universität, Göttingen, Germany.
Anna de JuanChemometrics Group, Universitat de Barcelona, Barcelona, Spain.
Cyril RuckebuschUniversité Lille, CNRS, UMR 8516, Laboratoire Avancé de Spectroscopie pourles Intéractions la Réactivité et l'Environnement (LASIRE), Lille, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Time-resolved fluorescence spectroscopy plays a crucial role when studying dynamic properties of complex photochemical systems. Nevertheless, the analysis of measured time decays and the extraction of exponential lifetimes often requires either the experimental assessment or the modeling of the instrument response function (IRF). However, the intrinsic nature of the IRF in the measurement process, which may vary across measurements due to chemical and instrumental factors, jeopardizes the results obtained by reconvolution approaches. In this paper, we introduce a novel methodology, called blind instrument response function identification (BIRFI), which enables the direct estimation of the IRF from the collected data. It capitalizes on the properties of single exponential signals to transform a deconvolution problem into a well-posed system identification problem. To delve into the specifics, we provide a step-by-step description of the BIRFI method and a protocol for its application to fluorescence decays. The performance of BIRFI is evaluated using simulated and time-correlated single-photon counting data. Our results demonstrate that the BIRFI methodology allows an accurate recovery of the IRF, yielding comparable or even superior results compared with those obtained with experimental IRFs when they are used for reconvolution by parametric model fitting.

Identifiers

PMID38590949
PMCPMC11000113

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.