ArticleMolecular horticulture2024
Large-scale analysis of the ARF and Aux/IAA gene families in 406 horticultural and other plants.
Article in Molecular horticulture, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 25 citations in OpenAlex.
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- Investigation of Reference Genes for qRT-PCR and ARF Gene Family inPlants (Basel, Switzerland) · 2026Article
- Genome-wide identification and expression analysis of the ARF gene family in wax gourd (Benincasa hispida).BMC plant biology · 2026Article
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- Large-scale comparative analysis of the nuclear factor-Y transcription factors across 320 horticultural and other plants.Horticulture research · 2026Article
- Genome-wide unraveling of theFrontiers in plant science · 2026Article
- Integrative analysis ofFrontiers in plant science · 2026Article
- Comprehensive Analysis of the ARF Gene Family Reveals Their Roles in Chinese Chestnut (Biology · 2025Article
- Systematic analysis of the Aux/IAA gene family in pineapple reveals insights into their structural diversity, expression dynamics, and interaction networks.BMC plant biology · 2025Article
- Physiological and molecular regulatory mechanisms of flavonoid and hormone biosynthesis in rejuvenated the oldest ginkgo tree.BMC genomics · 2025Article
- Genome-Wide Identification and Expression Analysis ofPlants (Basel, Switzerland) · 2025Article
- Genome-wide identification and salt stress-responsive expression profiling of Aux/IAA gene family in Asparagus officinalis.BMC plant biology · 2025Article
- Genome-Wide Identification of the ARF Gene Family in Safflower (International journal of molecular sciences · 2025Article
- Genome-wide association study of salicylic acid provides genetic insights for tea plant selective breeding.Horticulture research · 2025Article
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- Genome-wide characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Genome-Wide Identification and Characterization of thePlants (Basel, Switzerland) · 2024Article
- Identification, molecular evolution, codon bias, and expansion analysis of NLP transcription factor family in foxtail millet (Frontiers in genetics · 2024Article
Corrections and comments
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Authors and funding
10 authors at 3 institutions in 2 countries.
Funding
Abstract
The auxin response factor (ARF) and auxin/indole-3-acetic acid (Aux/IAA) family of genes are central components of the auxin signaling pathway and play essential roles in plant growth and development. Their large-scale analysis and evolutionary trajectory of origin are currently not known. Here, we identified the corresponding ARF and Aux/IAA family members and performed a large-scale analysis by scanning 406 plant genomes. The results showed that the ARF and Aux/IAA gene families originated from charophytes. The ARF family sequences were more conserved than the Aux/IAA family sequences. Dispersed duplications were the common expansion mode of ARF and Aux/IAA families in bryophytes, ferns, and gymnosperms; however, whole-genome duplication was the common expansion mode of the ARF and Aux/IAA families in basal angiosperms, magnoliids, monocots, and dicots. Expression and regulatory network analyses revealed that the Arabidopsis thaliana ARF and Aux/IAA families responded to multiple hormone, biotic, and abiotic stresses. The APETALA2 and serum response factor-transcription factor gene families were commonly enriched in the upstream and downstream genes of the ARF and Aux/IAA gene families. Our study provides a comprehensive overview of the evolutionary trajectories, structural functions, expansion mechanisms, expression patterns, and regulatory networks of these two gene families.
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