Evidence map›Paper›PMID 38589806›Full record

ArticleBMC genomics2024

Accuracy of Genomic prediction for fleece traits in Inner Mongolia Cashmere goats.

Xiaochun Yan, Jinquan Li, Libing He, Oljibilig Chen, Na Wang, Shuai Wang, Xiuyan Wang, Zhiying Wang, Rui Su

RetractedAbstract readRetracted Publication
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Xiaochun YanCollege of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia Autonomous Region, 010018, China.
Jinquan LiCollege of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia Autonomous Region, 010018, China.
Libing HeInner Mongolia Jinlai Livestock Technology Co., Ltd, Hohhot, Inner Mongolia Autonomous Region, 010018, China.
Oljibilig ChenInner Mongolia Yiwei White Cashmere Goat Co., Ltd, Ordos, Inner Mongolia Autonomous Region, 010018, China.
Na WangInner Mongolia Yiwei White Cashmere Goat Co., Ltd, Ordos, Inner Mongolia Autonomous Region, 010018, China.
Shuai WangInner Mongolia Yiwei White Cashmere Goat Co., Ltd, Ordos, Inner Mongolia Autonomous Region, 010018, China.
Xiuyan WangLivestock Improvement Center of Alxa Left Banner, Alxa League, Inner Mongolia Autonomous Region, 75000, China.
Zhiying WangCollege of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia Autonomous Region, 010018, China. wzhy0321@126.com.
Rui SuCollege of Animal Science, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia Autonomous Region, 010018, China. suruiyu@126.com.

Funding

China Agriculture Research System of MOF and MARA No. CARS-39High level Achievement Cultivation Special Project of School of Animal Science, Inner Mongolia Agricultural University GZL202204Inner Mongolia Agricultural University Outstanding Youth Science Fund Cultivation Project BR230304Inner Mongolia Autonomous Region Natural Science Foundation Project 2023LHMS03003National Key Research and Development Program of China 2022YFE0113300Science and Technology Research Project of Inner Mongolia Autonomous Region 2021GG0086Supported by Program for Innovative Research Team in Universities of Inner Mongolia Autonomous Region NMGIRT2322"Youth Science and Technology Talent Support Plan" of colleges and universities in Inner Mongolia Inner Mongolia Autonomous Region NJYT22038
6 · The paper itself

Abstract

The fleece traits are important economic traits of goats. With the reduction of sequencing and genotyping cost and the improvement of related technologies, genomic selection for goats has become possible. The research collect pedigree, phenotype and genotype information of 2299 Inner Mongolia Cashmere goats (IMCGs) individuals. We estimate fixed effects, and compare the estimates of variance components, heritability and genomic predictive ability of fleece traits in IMCGs when using the pedigree based Best Linear Unbiased Prediction (ABLUP), Genomic BLUP (GBLUP) or single-step GBLUP (ssGBLUP). The fleece traits considered are cashmere production (CP), cashmere diameter (CD), cashmere length (CL) and fiber length (FL). It was found that year of production, sex, herd and individual ages had highly significant effects on the four fleece traits (P < 0.01). All of these factors should be considered when the genetic parameters of fleece traits in IMCGs are evaluated. The heritabilities of FL, CL, CP and CD with ABLUP, GBLUP and ssGBLUP methods were 0.26 ~ 0.31, 0.05 ~ 0.08, 0.15 ~ 0.20 and 0.22 ~ 0.28, respectively. Therefore, it can be inferred that the genetic progress of CL is relatively slow. The predictive ability of fleece traits in IMCGs with GBLUP (56.18% to 69.06%) and ssGBLUP methods (66.82% to 73.70%) was significantly higher than that of ABLUP (36.73% to 41.25%). For the ssGBLUP method is significantly (29% ~ 33%) higher than that with ABLUP, and which is slightly (4% ~ 14%) higher than that of GBLUP. The ssGBLUP will be as an superiors method for using genomic selection of fleece traits in Inner Mongolia Cashmere goats.

Indexed as

GenomeGoatsAnimalsGenomicsGenotypeHumansModels, GeneticPhenotypeFleece traitsGenomic selectionInner Mongolia Cashmere goatsPrediction accuracyssGBLUP

Identifiers

PMID38589806
PMCPMC11000370

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.