Evidence map›Paper›PMID 38589536›Full record

ArticlePlanta2024

A rice GT61 glycosyltransferase possesses dual activities mediating 2-O-xylosyl and 2-O-arabinosyl substitutions of xylan.

Ruiqin Zhong, Dayong Zhou, Dennis R Phillips, Earle R Adams, Lirong Chen, John P Rose, Bi-Cheng Wang, Zheng-Hua Ye

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Article in Planta, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Ruiqin ZhongDepartment of Plant Biology, University of Georgia, Athens, GA, 30602, USA.
Dayong ZhouDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, 30602, USA.
Dennis R PhillipsDepartment of Chemistry, University of Georgia, Athens, GA, 30602, USA.
Earle R AdamsDepartment of Chemistry, University of Georgia, Athens, GA, 30602, USA.
Lirong ChenDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, 30602, USA.
John P RoseDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, 30602, USA.
Bi-Cheng WangDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, 30602, USA.
Zheng-Hua YeDepartment of Plant Biology, University of Georgia, Athens, GA, 30602, USA. yh@uga.edu.ORCID http://orcid.org/0000-0001-5714-744X
University of Georgia · US

Funding

US Department of Energy DE-FG02-03ER15415
6 · The paper itself

Abstract

MAIN

conclusionA member of the rice GT61 clade B is capable of transferring both 2-O-xylosyl and 2-O-arabinosyl residues onto xylan and another member specifically catalyses addition of 2-O-xylosyl residue onto xylan. Grass xylan is substituted predominantly with 3-O-arabinofuranose (Araf) as well as with some minor side chains, such as 2-O-Araf and 2-O-(methyl)glucuronic acid [(Me)GlcA]. 3-O-Arabinosylation of grass xylan has been shown to be catalysed by grass-expanded clade A members of the glycosyltransferase family 61. However, glycosyltransferases mediating 2-O-arabinosylation of grass xylan remain elusive. Here, we performed biochemical studies of two rice GT61 clade B members and found that one of them was capable of transferring both xylosyl (Xyl) and Araf residues from UDP-Xyl and UDP-Araf, respectively, onto xylooligomer acceptors, whereas the other specifically catalysed Xyl transfer onto xylooligomers, indicating that the former is a xylan xylosyl/arabinosyl transferase (named OsXXAT1 herein) and the latter is a xylan xylosyltransferase (named OsXYXT2). Structural analysis of the OsXXAT1- and OsXYXT2-catalysed reaction products revealed that the Xyl and Araf residues were transferred onto O-2 positions of xylooligomers. Furthermore, we demonstrated that OsXXAT1 and OsXYXT2 were able to substitute acetylated xylooligomers, but only OsXXAT1 could xylosylate GlcA-substituted xylooligomers. OsXXAT1 and OsXYXT2 were predicted to adopt a GT-B fold structure and molecular docking revealed candidate amino acid residues at the predicted active site involved in binding of the nucleotide sugar donor and the xylohexaose acceptor substrates. Together, our results establish that OsXXAT1 is a xylan 2-O-xylosyl/2-O-arabinosyl transferase and OsXYXT2 is a xylan 2-O-xylosyltransferase, which expands our knowledge of roles of the GT61 family in grass xylan synthesis.

Indexed as

ArabidopsisOryzaCell WallGlycosyltransferasesMolecular Docking SimulationPoaceaeUDP Xylose-Protein XylosyltransferaseXylansGlycosyltransferasesUDP Xylose-Protein XylosyltransferaseXylansArabinosyltransferaseCell wallGrassGT61RiceXylanXylosyltransferase

Identifiers

PMID38589536
OpenAlexW4394581448

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.