Evidence map›Paper›PMID 38589411›Full record

ArticleNature communications2024

Single-cell multiomics reveals the interplay of clonal evolution and cellular plasticity in hepatoblastoma.

Amélie Roehrig, Theo Z Hirsch, Aurore Pire, Guillaume Morcrette, Barkha Gupta, Charles Marcaillou, Sandrine Imbeaud, Christophe Chardot, Emmanuel Gonzales, Emmanuel Jacquemin and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  7. Trefoil Factor-3 Is a Hypoxia-Triggered Pro-Tumorigenic Factor in Hepatoblastoma.Liver international : official journal of the International Association for the Study of the Liver · 2026
    Article
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  20. Clinical application and drug resistance mechanism of gemcitabine.Frontiers in cell and developmental biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 12 institutions in 3 countries.

Amélie RoehrigCentre de Recherche des Cordeliers, Université Paris Cité, Sorbonne Université, INSERM, Paris, France.
Theo Z HirschCentre de Recherche des Cordeliers, Université Paris Cité, Sorbonne Université, INSERM, Paris, France.ORCID http://orcid.org/0000-0003-4428-2997
Aurore PireCentre de Recherche des Cordeliers, Université Paris Cité, Sorbonne Université, INSERM, Paris, France.ORCID http://orcid.org/0000-0002-3422-9482
Guillaume MorcretteCentre de Recherche des Cordeliers, Université Paris Cité, Sorbonne Université, INSERM, Paris, France.
Barkha GuptaCentre de Recherche des Cordeliers, Université Paris Cité, Sorbonne Université, INSERM, Paris, France.
Charles MarcaillouIntegraGen SA, Evry, France.
Sandrine ImbeaudCentre de Recherche des Cordeliers, Université Paris Cité, Sorbonne Université, INSERM, Paris, France.ORCID http://orcid.org/0000-0001-8439-6732
Christophe ChardotUniversité de Paris, APHP, Necker Hospital, Paris, France.
Emmanuel GonzalesPediatric Hepatology and Liver Transplantation Unit, National Reference Centre for Rare Pediatric Liver Diseases, FILFOIE, ERN RARE LIVER, APHP, Bicêtre University Hospital, University of Paris-Saclay, Le Kremlin Bicêtre, and INSERM UMR_S 1193, Hepatinov, University of Paris-Saclay, Orsay, France.
Emmanuel JacqueminPediatric Hepatology and Liver Transplantation Unit, National Reference Centre for Rare Pediatric Liver Diseases, FILFOIE, ERN RARE LIVER, APHP, Bicêtre University Hospital, University of Paris-Saclay, Le Kremlin Bicêtre, and INSERM UMR_S 1193, Hepatinov, University of Paris-Saclay, Orsay, France.
Masahiro SekiguchiDepartment of Pediatrics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-7941-9319
Junko TakitaDepartment of Pediatrics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-2452-6520
Genta NagaeGenome Science Laboratory, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-2929-7990
Eiso HiyamaDepartment of Pediatric Surgery, Hiroshima University Hospital, Hiroshima, Japan.ORCID http://orcid.org/0000-0001-9179-5037
Florent GuérinDepartment of Pediatric Surgery, Bicêtre Hospital, APHP, Paris-Saclay University, Orsay, France.ORCID http://orcid.org/0000-0002-3487-3745
Monique FabreDepartment of Pathology, Hôpital Universitaire Necker-Enfants malades, AP-HP, Paris, France.
Isabelle AertsOncology Center SIREDO, Institut Curie, PSL Research University, Paris, France.
Sophie TaqueDépartement de Pédiatrie, CHU Fontenoy, Rennes, France.
Véronique LaithierDepartment of Children Oncology, Centre Hospitalier Universitaire Besançon, Besançon, France.
Sophie BranchereauDepartment of Pediatric Surgery, Bicêtre Hospital, APHP, Paris-Saclay University, Orsay, France.
Catherine GuettierDepartment of Pathology Hôpital Bicêtre-AP-HP, INSERM U1193, Paris-Saclay University, Orsay, France.
Laurence BrugièresGustave Roussy, Université Paris-Saclay, Department of Children and Adolescents Oncology, Villejuif, France.
Brice FresneauGustave Roussy, Université Paris-Saclay, Department of Children and Adolescents Oncology, Villejuif, France.ORCID http://orcid.org/0000-0001-7603-7828
Jessica Zucman-Rossi *Centre de Recherche des Cordeliers, Université Paris Cité, Sorbonne Université, INSERM, Paris, France. jessica.zucman-rossi@inserm.fr.ORCID http://orcid.org/0000-0002-5687-0334
Eric Letouzé *Centre de Recherche des Cordeliers, Université Paris Cité, Sorbonne Université, INSERM, Paris, France. eric.letouze@inserm.fr.ORCID http://orcid.org/0000-0002-6369-2839
Inserm · FRUniversité Paris-Saclay · FRHôpital Necker-Enfants Malades · FRThe University of Tokyo · JPCentre Hospitalier Universitaire de Besançon · FRCentre National de la Recherche Scientifique · FRHiroshima University · JPHôpital Fontmaure · FRIntegraGen (France) · FRKyoto University · JPUniversité Paris Cité · FRUniversité Paris Sciences et Lettres · FR

Funding

Fondation ARC pour la Recherche sur le Cancer (ARC Foundation for Cancer Research) ARCDOC42022010004699Institut National Du Cancer (French National Cancer Institute) PELICAN.resist, PEDIAHR22-009Ligue Contre le Cancer Equipe Labellisée
6 · The paper itself

Abstract

Hepatoblastomas (HB) display heterogeneous cellular phenotypes that influence the clinical outcome, but the underlying mechanisms are poorly understood. Here, we use a single-cell multiomic strategy to unravel the molecular determinants of this plasticity. We identify a continuum of HB cell states between hepatocytic (scH), liver progenitor (scLP) and mesenchymal (scM) differentiation poles, with an intermediate scH/LP population bordering scLP and scH areas in spatial transcriptomics. Chromatin accessibility landscapes reveal the gene regulatory networks of each differentiation pole, and the sequence of transcription factor activations underlying cell state transitions. Single-cell mapping of somatic alterations reveals the clonal architecture of each tumor, showing that each genetic subclone displays its own range of cellular plasticity across differentiation states. The most scLP subclones, overexpressing stem cell and DNA repair genes, proliferate faster after neo-adjuvant chemotherapy. These results highlight how the interplay of clonal evolution and epigenetic plasticity shapes the potential of HB subclones to respond to chemotherapy.

Indexed as

HepatoblastomaLiver NeoplasmsCell PlasticityClonal EvolutionHumansMultiomics

Identifiers

PMID38589411
PMCPMC11001886
OpenAlexW4394568323

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.