Evidence map›Paper›PMID 38589360›Full record

ArticleNature communications2024

Engineering an artificial catch bond using mechanical anisotropy.

Zhaowei Liu, Haipei Liu, Andrés M Vera, Byeongseon Yang, Philip Tinnefeld, Michael A Nash

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Engineering tunable catch bonds with DNA.Nature communications · 2024
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zhaowei LiuInstitute of Physical Chemistry, Department of Chemistry, University of Basel, 4058, Basel, Switzerland.ORCID http://orcid.org/0000-0001-8214-8882
Haipei LiuInstitute of Physical Chemistry, Department of Chemistry, University of Basel, 4058, Basel, Switzerland.ORCID http://orcid.org/0000-0002-8724-5400
Andrés M VeraFaculty of Chemistry and Center for NanoScience, Ludwig-Maximilians-Universität München, Munich, Germany.ORCID http://orcid.org/0000-0002-3932-8236
Byeongseon YangInstitute of Physical Chemistry, Department of Chemistry, University of Basel, 4058, Basel, Switzerland.ORCID http://orcid.org/0000-0003-0660-5193
Philip TinnefeldFaculty of Chemistry and Center for NanoScience, Ludwig-Maximilians-Universität München, Munich, Germany.ORCID http://orcid.org/0000-0003-4290-7770
Michael A NashInstitute of Physical Chemistry, Department of Chemistry, University of Basel, 4058, Basel, Switzerland. michael.nash@bsse.ethz.ch.ORCID http://orcid.org/0000-0003-3842-1567

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) MMA-715207Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 200021_175478
6 · The paper itself

Abstract

Catch bonds are a rare class of protein-protein interactions where the bond lifetime increases under an external pulling force. Here, we report how modification of anchor geometry generates catch bonding behavior for the mechanostable Dockerin G:Cohesin E (DocG:CohE) adhesion complex found on human gut bacteria. Using AFM single-molecule force spectroscopy in combination with bioorthogonal click chemistry, we mechanically dissociate the complex using five precisely controlled anchor geometries. When tension is applied between residue #13 on CohE and the N-terminus of DocG, the complex behaves as a two-state catch bond, while in all other tested pulling geometries, including the native configuration, it behaves as a slip bond. We use a kinetic Monte Carlo model with experimentally derived parameters to simulate rupture force and lifetime distributions, achieving strong agreement with experiments. Single-molecule FRET measurements further demonstrate that the complex does not exhibit dual binding mode behavior at equilibrium but unbinds along multiple pathways under force. Together, these results show how mechanical anisotropy and anchor point selection can be used to engineer artificial catch bonds.

Indexed as

CohesinsMechanical PhenomenaAnisotropyBacteriaHumansKineticsProtein BindingCohesins

Identifiers

PMID38589360
PMCPMC11001878

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.