Evidence map›Paper›PMID 38588959›Full record

ArticleThe Journal of infection2024

Viruses associated with measles-like illnesses in Uganda.

Prossy Namuwulya, Shirin Ashraf, Marc Niebel, Alfred Ssekagiri, Phionah Tushabe, Proscovia Kakooza, Lily Tong, Henry Bukenya, Hanna Jerome, Chris Davis and 19 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of infection, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 6 institutions in 2 countries.

Prossy NamuwulyaUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Shirin AshrafMRC - University of Glasgow Centre for Virus Research (CVR), Glasgow, UK.
Marc NiebelMRC - University of Glasgow Centre for Virus Research (CVR), Glasgow, UK.
Alfred SsekagiriUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Phionah TushabeUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Proscovia KakoozaMinistry of Health, Kampala, Uganda.
Lily TongMRC - University of Glasgow Centre for Virus Research (CVR), Glasgow, UK.
Henry BukenyaUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Hanna JeromeMRC - University of Glasgow Centre for Virus Research (CVR), Glasgow, UK.
Chris DavisMRC - University of Glasgow Centre for Virus Research (CVR), Glasgow, UK.
Molly BirungiUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Irene TuryahabweUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Arnold MugagaUganda Virus Research Institute (UVRI), Entebbe, Uganda.
James Peter ElikuUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Aine FrancisUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Lucy NakabazziUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Fred NsubugaMinistry of Health, Kampala, Uganda.
Edson KatushabeWorld Health Organization, Kampala, Uganda.
Annet KisakyeWorld Health Organization, Kampala, Uganda.
Immaculate AmpeireMinistry of Health, Kampala, Uganda.
Ann NantezaCollege of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, Kampala, Uganda.
Pontiano KaleebuUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Barnabas BakamutumahoUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Peninah NsambaCollege of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, Kampala, Uganda.
Anne KazibweCollege of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, Kampala, Uganda.
Ana da Silva FilipeMRC - University of Glasgow Centre for Virus Research (CVR), Glasgow, UK.
Robert TweyongyereCollege of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, Kampala, Uganda.
Josephine BwogiUganda Virus Research Institute (UVRI), Entebbe, Uganda.
Emma C ThomsonMRC - University of Glasgow Centre for Virus Research (CVR), Glasgow, UK; London School of Hygiene and Tropical Medicine (LSHTM), London, UK. Electronic address: Emma.Thomson@glasgow.ac.uk.
Uganda Virus Research Institute · UGMRC University of Glasgow Centre for Virus Research · GBMakerere University · UGMinistry of Health · UGWorld Health Organization - Uganda · UGLondon School of Hygiene & Tropical Medicine · GB

Funding

Medical Research Council MC_UU_12014/12World Health Organization 001
6 · The paper itself

Abstract

objectivesIn this study, we investigated the causes of measles-like illnesses (MLI) in the Uganda national surveillance program in order to inform diagnostic assay selection and vaccination strategies.

methodsWe used metagenomic next-generation sequencing (M-NGS) on the Illumina platform to identify viruses associated with MLI (defined as fever and rash in the presence of either cough, coryza or conjunctivitis) in patient samples that had tested IgM negative for measles between 2010 and 2019.

resultsViral genomes were identified in 87/271 (32%) of samples, of which 44/271 (16%) contained 12 known viral pathogens. Expected viruses included rubella, human parvovirus B19, Epstein Barr virus, human herpesvirus 6B, human cytomegalovirus, varicella zoster virus and measles virus (detected within the seronegative window-period of infection) and the blood-borne hepatitis B virus. We also detected Saffold virus, human parvovirus type 4, the human adenovirus C2 and vaccine-associated poliovirus type 1.

conclusionsThe study highlights the presence of undiagnosed viruses causing MLI in Uganda, including vaccine-preventable illnesses. NGS can be used to monitor common viral infections at a population level, especially in regions where such infections are prevalent, including low and middle income countries to guide vaccination policy and optimize diagnostic assays.

Indexed as

High-Throughput Nucleotide SequencingMeaslesAdolescentAdultChildChild, PreschoolFemaleGenome, ViralHumansInfantMaleMeasles virusMetagenomicsUgandaVirus DiseasesVirusesMeasles-like illnessMetagenomic next-generation sequencingSerumUgandaViruses

Identifiers

PMID38588959
PMCPMC11060986
OpenAlexW4394008664

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.