Evidence map›Paper›PMID 38588769›Full record

ArticleThe Journal of molecular diagnostics : JMD2024

Cost-Effective and Scalable Clonal Hematopoiesis Assay Provides Insight into Clonal Dynamics.

Taralynn Mack, Caitlyn Vlasschaert, Kelly von Beck, Alexander J Silver, J Brett Heimlich, Hannah Poisner, Henry R Condon, Jessica Ulloa, Andrew L Sochacki, Travis P Spaulding and 6 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
17.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 39 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Clinical Impact and Dynamics of Clonal Hematopoiesis withJournal of nuclear medicine : official publication, Society of Nuclear Medicine · 2026
    Article
  5. Article
  6. Review
  7. Genetic factors contributing to atherosclerosis.Current opinion in cardiology · 2026
    Review
  8. Article
  9. Article
  10. Review
  11. Clonal Hematopoiesis of Indeterminate Potential After Radiation Therapy.International journal of radiation oncology, biology, physics · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Clonal Hematopoiesis of Indeterminate Potential Influences Breast Cancer Outcomes in a Genotype-Specific Manner.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Taralynn MackVanderbilt Genetics Institute, Vanderbilt University School of Medicine, Nashville, Tennessee.
Caitlyn VlasschaertDepartment of Medicine, Queen's University, Kingston, Ontario, Canada.
Kelly von BeckDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee.
Alexander J SilverDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee; Program in Cancer Biology, Vanderbilt University School of Medicine, Nashville, Tennessee.
J Brett HeimlichDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee.
Hannah PoisnerVanderbilt Genetics Institute, Vanderbilt University School of Medicine, Nashville, Tennessee.
Henry R CondonVanderbilt Genetics Institute, Vanderbilt University School of Medicine, Nashville, Tennessee.
Jessica UlloaVanderbilt Genetics Institute, Vanderbilt University School of Medicine, Nashville, Tennessee.
Andrew L SochackiDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee.
Travis P SpauldingDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee.
Ashwin KishtagariDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee.
Cosmin A BejanDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee.
Yaomin XuDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee; Department of Biostatistics, Vanderbilt University Medical Center, Nashville, Tennessee.
Michael R SavonaDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee; Program in Cancer Biology, Vanderbilt University School of Medicine, Nashville, Tennessee; Vanderbilt Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, Tennessee; Center for Immunobiology, Vanderbilt University Medical Center, Nashville, Tennessee.
Angela JonesVanderbilt Genetics Institute, Vanderbilt University School of Medicine, Nashville, Tennessee.
Alexander G BickVanderbilt Genetics Institute, Vanderbilt University School of Medicine, Nashville, Tennessee; Division of Genetic Medicine, Vanderbilt University Medical Center, Nashville, Tennessee. Electronic address: alexander.bick@vumc.org.
Vanderbilt University · USVanderbilt University Medical Center · USQueen's University · CA

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI STACIE B DUSETZINA · 1995 to 2026
$172.8M
Vanderbilt Institute for Clinical and Translational Research (VICTR) -Identifying correlates of functional immunity in SARS-CoV-2 convalescent plasmaUL1TR002243 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Paul A. Harris, Wesley H Self · 2017 to 2026
$130.7M
VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007347 · NIGMS · VANDERBILT UNIVERSITY · PI WILLIAMS, CHRISTOPHER S. · 1985 to 2023
$26.3M
Initiative for Maximizing Student Development (IMSD) at VanderbiltT32GM139800 · NIGMS · VANDERBILT UNIVERSITY · PI RHOADES (STERLING), JULIE A, SEREZANI, C. HENRIQUE · 2021 to 2025
$3.7M
Development of a Phenotype-based Predictive Analytic for Acute Myeloid LeukemiaR01CA262287 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Tomer M Mark, Michael R Savona · 2021 to 2026
$3.2M
Targeting Clonal Hematopoiesis of Indeterminate Potential Using Human GeneticsDP5OD029586 · OD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BICK, ALEXANDER · 2020 to 2024
$2.3M
Modular Automated -80C Sample Storage SystemS10OD025092 · OD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GOLDENRING, JAMES RICHARD · 2019 to 2019
$2.0M
Training Program on Genetic Variation and Human PhenotypesT32GM145734 · NIGMS · VANDERBILT UNIVERSITY · PI Jennifer Below, DAVID C SAMUELS · 2022 to 2026
$1.6M
Automated Storage and Retrieval of Biological SystemsS10RR025141 · NCRR · VANDERBILT UNIVERSITY · PI RODEN, DAN M · 2008 to 2008
$988k
BioVU Plasma Storage EquipmentS10OD017985 · OD · VANDERBILT UNIVERSITY · PI RODEN, DAN M · 2014 to 2014
$239k
NCATS NIH HHS UL1 TR000445NCATS NIH HHS UL1 TR002243NCI NIH HHS P30 CA068485NCI NIH HHS R01 CA262287NCRR NIH HHS S10 RR025141NCRR NIH HHS UL1 RR024975NIDDK NIH HHS F30 DK127699NIGMS NIH HHS T32 GM007347NIGMS NIH HHS T32 GM139800NIGMS NIH HHS T32 GM145734NIH HHS DP5 OD029586NIH HHS S10 OD017985NIH HHS S10 OD025092NIOSH CDC HHS U01 OH012271
6 · The paper itself

Abstract

Clonal hematopoiesis of indeterminate potential (CHIP) is a common age-related phenomenon in which hematopoietic stem cells acquire mutations in a select set of genes commonly mutated in myeloid neoplasia which then expand clonally. Current sequencing assays to detect CHIP mutations are not optimized for the detection of these variants and can be cost-prohibitive when applied to large cohorts or to serial sequencing. In this study, an affordable (approximately US $8 per sample), accurate, and scalable sequencing assay for CHIP is introduced and validated. The efficacy of the assay was demonstrated by identifying CHIP mutations in a cohort of 456 individuals with DNA collected at multiple time points in Vanderbilt University's biobank and quantifying clonal expansion rates over time. A total of 101 individuals with CHIP/clonal cytopenia of undetermined significance were identified, and individual-level clonal expansion rate was calculated using the variant allele fraction at both time points. Differences in clonal expansion rate by driver gene were observed, but there was also significant individual-level heterogeneity, emphasizing the multifactorial nature of clonal expansion. Additionally, mutation co-occurrence and clonal competition between multiple driver mutations were explored.

Indexed as

Clonal HematopoiesisMutationAdultAgedAged, 80 and overClonal EvolutionCost-Benefit AnalysisFemaleHematopoiesisHematopoietic Stem CellsHigh-Throughput Nucleotide SequencingHumansMaleMiddle Aged

Identifiers

PMID38588769
PMCPMC11536471
OpenAlexW4394015539

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.