Evidence map›Paper›PMID 38588409›Full record

ArticleCancer research2024

Comprehensive Transcriptomic Analysis of EWSR1::WT1 Targets Identifies CDK4/6 Inhibitors as an Effective Therapy for Desmoplastic Small Round Cell Tumors.

Justin W Magrath, Shruthi Sanjitha Sampath, Dane A Flinchum, Alifiani B Hartono, Ilon N Goldberg, Julia R Boehling, Suzana D Savkovic, Sean B Lee

Open access · hybridAbstract read
In one paragraph

Article in Cancer research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
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  12. Desmoplastic small round cell tumor: an update of current management practices.Journal of the Egyptian National Cancer Institute · 2025
    Review
  13. Article
  14. Review
  15. HER2 Antibody-Drug Conjugates Are Active against Desmoplastic Small Round Cell Tumor.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Justin W MagrathDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, Louisiana.ORCID 0000-0003-1132-4433
Shruthi Sanjitha SampathDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, Louisiana.ORCID 0000-0002-5035-6967
Dane A FlinchumDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, Louisiana.ORCID 0009-0006-4713-354X
Alifiani B HartonoDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, Louisiana.ORCID 0000-0003-1327-0811
Ilon N GoldbergDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, Louisiana.ORCID 0000-0002-2891-6999
Julia R BoehlingDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, Louisiana.ORCID 0009-0004-3919-4620
Suzana D SavkovicDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, Louisiana.ORCID 0000-0002-9674-8966
Sean B LeeDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, Louisiana.ORCID 0000-0001-6211-3498
Tulane University · US

Funding

An Integrative Approach to Identify Vulnerabilities in Pediatric Cancer DSRCTR01CA222856 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI LEE, SEAN B. · 2019 to 2024
$1.7M
NCI NIH HHS R01 CA222856
6 · The paper itself

Abstract

Desmoplastic small round cell tumors (DSRCT) are a type of aggressive, pediatric sarcoma characterized by the EWSR1::WT1 fusion oncogene. Targeted therapies for DSRCT have not been developed, and standard multimodal therapy is insufficient, leading to a 5-year survival rate of only 15% to 25%. Here, we depleted EWSR1::WT1 in DSRCT and established its essentiality in vivo. Transcriptomic analysis revealed that EWSR1::WT1 induces unique transcriptional alterations compared with WT1 and other fusion oncoproteins and that EWSR1::WT1 binding directly mediates gene upregulation. The E-KTS isoform of EWSR1::WT1 played a dominant role in transcription, and it bound to the CCND1 promoter and stimulated DSRCT growth through the cyclin D-CDK4/6-RB axis. Treatment with the CDK4/6 inhibitor palbociclib successfully reduced growth in two DSRCT xenograft models. As palbociclib has been approved by the FDA for the treatment of breast cancer, these findings demonstrate the sensitivity of DSRCT to palbociclib and support immediate clinical investigation of palbociclib for treating this aggressive pediatric cancer. SIGNIFICANCE: EWSR1::WT1 is essential for desmoplastic small round cell tumors and upregulates the cyclin D-CDK4/6-RB axis that can be targeted with palbociclib, providing a targeted therapeutic strategy for treating this deadly tumor type.

Indexed as

Cyclin-Dependent Kinase 4Cyclin-Dependent Kinase 6Desmoplastic Small Round Cell TumorOncogene Proteins, FusionPiperazinesPyridinesRNA-Binding Protein EWSXenograft Model Antitumor AssaysAnimalsCell Line, TumorCell ProliferationGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMiceMice, Inbred NODCDK4 protein, humanCDK6 protein, humanCyclin-Dependent Kinase 4Cyclin-Dependent Kinase 6EWSR1 protein, humanOncogene Proteins, FusionpalbociclibPiperazinesProtein Kinase InhibitorsPyridinesRNA-Binding Protein EWSWT1 protein, humanWT1 Proteins

Identifiers

PMID38588409
PMCPMC11063761
OpenAlexW4394581726

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.