Evidence map›Paper›PMID 38587074›Full record

ArticleJCI insight2024

HIV-1-infected T cell clones are shared across cerebrospinal fluid and blood during ART.

Meng Wang, Jennifer Yoon, Hailey Reisert, Bibhuprasad Das, Benjamin Orlinick, Jennifer Chiarella, Elias K Halvas, John Mellors, Alina Ps Pang, Lydia Aoun Barakat and 6 more

Abstract read
In one paragraph

Article in JCI insight, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  16. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Meng WangProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, USA.
Jennifer YoonSection of Infectious Diseases, and.
Hailey ReisertSection of Infectious Diseases, and.
Bibhuprasad DasSection of Infectious Diseases, and.
Benjamin OrlinickSection of Infectious Diseases, and.
Jennifer ChiarellaDepartment of Neurology, Yale School of Medicine, New Haven, Connecticut, USA.
Elias K HalvasDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
John MellorsDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Alina Ps PangDepartment of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York City, New York, USA.
Lydia Aoun BarakatSection of Infectious Diseases, and.
Margaret FikrigSection of Infectious Diseases, and.
Joshua CyktorDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Yuval KlugerDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut, USA.
Serena SpudichDepartment of Neurology, Yale School of Medicine, New Haven, Connecticut, USA.
Michael J CorleyDepartment of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York City, New York, USA.
Shelli F FarhadianSection of Infectious Diseases, and.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
CNS Viral Persistence and Neuropsychiatric Perturbations in HIV: Single cell and Molecular InterrogationR01MH125737 · NIMH · YALE UNIVERSITY · PI CYKTOR, JOSHUA CHARLES, SPUDICH, SERENA S · 2021 to 2025
$5.4M
Decoding epigenetic scars of smoldering neuroinflammation and CNS complications in people with HIVR01MH134391 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI Michael Jay Corley, Shelli Farhadian · 2023 to 2026
$3.8M
Understanding the cellular basis for persistent immune activation in the central nervous system during virologically suppressed HIVK23MH118999 · NIMH · YALE UNIVERSITY · PI FARHADIAN, SHELLI · 2018 to 2021
$770k
NCATS NIH HHS UL1 TR001863NIMH NIH HHS K23 MH118999NIMH NIH HHS R01 MH125737NIMH NIH HHS R01 MH134391
6 · The paper itself

Abstract

The central nervous system HIV reservoir is incompletely understood and is a major barrier to HIV cure. We profiled people with HIV (PWH) and uninfected controls through single-cell transcriptomic and T cell receptor (TCR) sequencing to understand the dynamics of HIV persistence in the CNS. In PWH on ART, we found that most participants had single cells containing HIV-1 RNA, which was found predominantly in CD4 central memory T cells, in both cerebrospinal fluid (CSF) and blood. HIV-1 RNA-containing cells were found more frequently in CSF than blood, indicating a higher burden of reservoir cells in the CNS than blood for some PWH. Most CD4 T cell clones containing infected cells were compartment specific, while some (22%) - including rare clones with members of the clone containing detectable HIV RNA in both blood and CSF - were found in both CSF and blood. These results suggest that infected T cells trafficked between tissue compartments and that maintenance and expansion of infected T cell clones contributed to the CNS reservoir in PWH on ART.

Indexed as

HIV-1HIV InfectionsCentral Nervous SystemClone CellsHumansRNARNAAIDS/HIVImmunologyT cell receptor

Identifiers

PMID38587074
PMCPMC11128194

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.