Evidence map›Paper›PMID 38586036›Full record

ArticlebioRxiv : the preprint server for biology2024

Detecting rhythmic spiking through the power spectra of point process model residuals.

Karin M Cox, Daisuke Kase, Taieb Znati, Robert S Turner

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Karin M CoxDepartment of Computer Science, University of Pittsburgh, Pittsburgh, Pennsylvania, 15260, United States of America.ORCID 0000-0002-5418-0508
Daisuke KaseAligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, Maryland, 20815, United States of America.ORCID 0000-0001-6787-5862
Taieb ZnatiDepartment of Computer Science, University of Pittsburgh, Pittsburgh, Pennsylvania, 15260, United States of America.ORCID 0000-0002-9389-3033
Robert S TurnerAligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, Maryland, 20815, United States of America.ORCID 0000-0002-6074-4365
University of Pittsburgh · US

Funding

DBS Protocols for Long-Lasting Therapeutic Benefit in Mouse and Primate Models of Parkinson's DiseaseR01NS117058 · NINDS · CARNEGIE-MELLON UNIVERSITY · PI GITTIS, ARYN HILARY, TURNER, ROBERT STERLING · 2020 to 2024
$2.8M
Motor sequences and basal ganglia-cortical circuitsR01NS113817 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TURNER, ROBERT STERLING · 2020 to 2024
$1.7M
NINDS NIH HHS R01 NS113817NINDS NIH HHS R01 NS117058
6 · The paper itself

Abstract

Objective: Oscillations figure prominently as neurological disease hallmarks and neuromodulation targets. To detect oscillations in a neuron's spiking, one might attempt to seek peaks in the spike train's power spectral density (PSD) which exceed a flat baseline. Yet for a non-oscillating neuron, the PSD is not flat: The recovery period ("RP", the post-spike drop in spike probability, starting with the refractory period) introduces global spectral distortion. An established "shuffling" procedure corrects for RP distortion by removing the spectral component explained by the inter-spike interval (ISI) distribution. However, this procedure sacrifices oscillation-related information present in the ISIs, and therefore in the PSD. We asked whether point process models (PPMs) might achieve more selective RP distortion removal, thereby enabling improved oscillation detection. Approach: In a novel "residuals" method, we first estimate the RP duration ( Main results: We compared the residuals and shuffling methods' ability to enable accurate oscillation detection with flat baseline-assuming tests. Over synthetic data, the residuals method generally outperformed the shuffling method in classification of true- versus false-positive oscillatory power, principally due to enhanced sensitivity in sparse spike trains. In single-unit data from the internal globus pallidus (GPi) and ventrolateral anterior thalamus (VLa) of a parkinsonian monkey -- in which alpha-beta oscillations (8-30 Hz) were anticipated -- the residuals method reported the greatest incidence of significant alpha-beta power, with low firing rates predicting residuals-selective oscillation detection. Significance: These results encourage continued development of the residuals approach, to support more accurate oscillation detection. Improved identification of oscillations could promote improved disease models and therapeutic technologies.

Identifiers

PMID38586036
PMCPMC10996479
OpenAlexW4386553052

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.