Evidence map›Paper›PMID 38584776›Full record

ArticleIn silico pharmacology2024

Insights on the dynamic behavior of protein disulfide isomerase in the solution environment through the SAXS technique.

Chandrasekar Sanyasi, Susmida Seni Balakrishnan, Thirunavukkarasu Chinnasamy, Nagarajan Venugopalan, Palani Kandavelu, Renu Batra-Safferling, Suresh Kumar Muthuvel

Abstract read
In one paragraph

Article in In silico pharmacology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Chandrasekar SanyasiDepartment of Bioinformatics, School of Life Sciences, Pondicherry University, Pondicherry, 605014 India.
Susmida Seni BalakrishnanDepartment of Bioinformatics, School of Life Sciences, Pondicherry University, Pondicherry, 605014 India.
Thirunavukkarasu ChinnasamyDepartment of Biochemistry and Molecular Biology, School of Life Sciences, Pondicherry University, Pondicherry, 605014 India.
Nagarajan VenugopalanGMCA Structural Biology Facility, X-Ray Science Division, Argonne National Laboratory, Argonne, IL USA.
Palani KandaveluSER-CAT and The Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30601 USA.
Renu Batra-SafferlingInstitute of Complex Systems (ICS-6: Structural Biochemistry), Forschungszentrum Jülich, 52425 Jülich, Germany.
Suresh Kumar MuthuvelDepartment of Bioinformatics, School of Life Sciences, Pondicherry University, Pondicherry, 605014 India.

Funding

Time resolved SAXS studies on the RP2/Arl3 complex pp.484-485P41GM103622 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2012 to 2020
$11.9M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Advanced Pixel Array Detector for Time-Resolved SAXS and Fiber DiffractionS10OD018090 · OD · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2014 to 2014
$529k
NIGMS NIH HHS P41 GM103311NIGMS NIH HHS P41 GM103622NIH HHS S10 OD018090
6 · The paper itself

Abstract

The dynamic behavior of Protein Disulfide Isomerase (PDI) in an aqueous solution environment under physiologically active pH has been experimentally verified in this study using Small Angle X-ray Scattering (SAXS) technique. The structural mechanism of dimerization for full-length PDI molecules and co-complex with two renowned substrates has been comprehensively discussed. The structure models obtained from the SAXS data of PDI purified from bovine liver display behavior duality between unaccompanied-enzyme and after engaged with substrates. The analysis of SAXS data revealed that PDI exists as a homo-dimer in the solution environment, and substrate induction provoked its segregation into monomer to enable the enzyme to interact systematically with incoming clients. Supplementary Information: The online version contains supplementary material available at 10.1007/s40203-024-00198-0.

Indexed as

Ab-initio modelingBovine pancreatic trypsin inhibitorEnsemble Optimization MethodProtein Disulfide IsomeraseRibonucleaseSmall-angle X-ray scattering

Identifiers

PMID38584776
PMCPMC10997565

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.