Evidence map›Paper›PMID 38584507›Full record

ArticleAnalytical methods : advancing methods and applications2024

An on-line SPE-LC-MS/MS method for quantification of nucleobases and nucleosides present in biological fluids.

Yi-Ming Liu, Shuguan Wang, Amani Dickenson, Jinghe Mao, Xiaolin Bai, Xun Liao

Open access · greenAbstract read
In one paragraph

Article in Analytical methods : advancing methods and applications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yi-Ming LiuDepartment of Chemistry, Physics, and Atmospheric Science, Jackson State University, Jackson, MS 39217, USA. yiming.liu@jsums.edu.ORCID 0000-0002-7760-9565
Shuguan WangDepartment of Chemistry, Physics, and Atmospheric Science, Jackson State University, Jackson, MS 39217, USA. yiming.liu@jsums.edu.
Amani DickensonDepartment of Chemistry, Physics, and Atmospheric Science, Jackson State University, Jackson, MS 39217, USA. yiming.liu@jsums.edu.
Jinghe MaoDepartment of Biology, Tougaloo College, Tougaloo, MS 39174, USA.
Xiaolin BaiChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China. liaoxun@cib.ac.cn.
Xun LiaoChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China. liaoxun@cib.ac.cn.
Jackson State University · USChinese Academy of Sciences · CNTougaloo College · US

Funding

Strengthening the Biomedical Data Science Training Program at Jackson State UniversityU54MD015929 · NIMHD · JACKSON STATE UNIVERSITY · PI TURNER, TIMOTHY · 2020 to 2024
$12.1M
PCR-free UPLC-MS/MS based quantitative assay of microRNAsR16GM145223 · NIGMS · JACKSON STATE UNIVERSITY · PI YIMING LIU · 2022 to 2026
$729k
NIGMS NIH HHS R16 GM145223NIMHD NIH HHS U54 MD015929
6 · The paper itself

Abstract

Solid phase extraction (SPE) and liquid chromatographic (LC) separation of nucleobases and nucleosides are challenging due to the high hydrophilicity of these compounds. Herein we report a novel on-line SPE-LC-MS/MS method for their quantification after pre-column derivatization with chloroacetaldehyde (CAA). The method proposed is selective and sensitive with limits of detection at the nano-molar level. Analysis of urine and saliva samples by using this method is demonstrated. Adenine, guanine, cytosine, adenosine, guanosine, and cytidine were found in the range from 0.19 (guanosine) to 1.83 μM (cytidine) in urine and from 0.015 (guanosine) to 0.79 μM (adenine) in saliva. Interestingly, methylation of cytidine was found to be significantly different in urine from that in saliva. While 5-hydroxymethylcytidine was detected at a very low level (<0.05 μM) in saliva, it was found to be the most prominent methylated cytidine in urine at a high level of 3.33 μM. Since on-line SPE is deployed, the proposed LC-MS/MS quantitative assay is convenient to carry out and offers good assay accuracy and repeatability.

Indexed as

NucleosidesSalivaSolid Phase ExtractionHumansLimit of DetectionLiquid Chromatography-Mass SpectrometryNucleosides

Identifiers

PMID38584507
PMCPMC11151739
OpenAlexW4393145191

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.