Evidence map›Paper›PMID 38582945›Full record

SynthesisCommunications biology2024

A multi-ancestry GWAS of Fuchs corneal dystrophy highlights the contributions of laminins, collagen, and endothelial cell regulation.

Bryan R Gorman, Michael Francis, Cari L Nealon, Christopher W Halladay, Nalvi Duro, Kyriacos Markianos, Giulio Genovese, Pirro G Hysi, Hélène Choquet, Natalie A Afshari and 10 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 13 institutions in 2 countries.

Bryan R Gorman *Center for Data and Computational Sciences (C-DACS), VA Boston Healthcare System, Boston, MA, USA.ORCID 0000-0002-4239-4672
Michael Francis *Center for Data and Computational Sciences (C-DACS), VA Boston Healthcare System, Boston, MA, USA.ORCID 0000-0002-1320-7161
Cari L NealonEye Clinic, VA Northeast Ohio Healthcare System, Cleveland, OH, USA.
Christopher W HalladayCenter of Innovation in Long Term Services and Supports, Providence VA Medical Center, Providence, RI, USA.
Nalvi DuroCenter for Data and Computational Sciences (C-DACS), VA Boston Healthcare System, Boston, MA, USA.
Kyriacos MarkianosCenter for Data and Computational Sciences (C-DACS), VA Boston Healthcare System, Boston, MA, USA.ORCID 0000-0003-0214-6014
Giulio GenoveseProgram in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0003-3066-5575
Pirro G HysiDepartment of Ophthalmology, King's College London, London, UK.ORCID 0000-0001-5752-2510
Hélène ChoquetDivision of Research, Kaiser Permanente Northern California (KPNC), Oakland, CA, USA.ORCID 0000-0001-9839-8667
Natalie A AfshariShiley Eye Institute, Viterbi Family Department of Ophthalmology, University of California, San Diego, La Jolla, CA, USA.
Yi-Ju LiDepartment of Biostatistics and Bioinformatics, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0001-6996-4834
VA Million Veteran Program
J Michael GazianoMassachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, MA, USA.
Adriana M HungDivision of Nephrology and Hypertension, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Wen-Chih WuCardiology Section, Medical Service, Providence VA Medical Center, Providence, RI, USA.ORCID 0000-0002-2834-2024
Paul B GreenbergOphthalmology Section, Providence VA Medical Center, Providence, RI, USA.
Saiju PyarajanCenter for Data and Computational Sciences (C-DACS), VA Boston Healthcare System, Boston, MA, USA.ORCID 0000-0002-9047-3762
Jonathan H LassDepartment of Ophthalmology and Visual Sciences, Case Western Reserve University, Cleveland, OH, USA.
Neal S PeacheyResearch Service, VA Northeast Ohio Healthcare System, Cleveland, OH, USA. neal.peachey@va.gov.ORCID 0000-0002-4419-7226
Sudha K IyengarResearch Service, VA Northeast Ohio Healthcare System, Cleveland, OH, USA. ski@case.edu.ORCID 0000-0001-7488-250X
Booz Allen Hamilton (United States) · USProvidence VA Medical Center · USVA Northeast Ohio Healthcare System · USVA Boston Healthcare System · USVA Palo Alto Health Care System · USBrigham and Women's Hospital · USBroad Institute · USBrown University · USCleveland Clinic Lerner College of Medicine · USDuke University · USKaiser Permanente · USKing's College London · GBUniversity of California San Diego · US

Funding

Clinical and Translational Science Collaborative of ClevelandUL1TR002548 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI MCCOMSEY, GRACE A · 2018 to 2022
$35.5M
Clinical and Translational Science Collaborative of Northern Ohio, Catalyzing Linkages to Equity in Health (CLE Health)UM1TR004528 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI GRACE A MCCOMSEY · 2023 to 2026
$32.1M
TISSUE CULTURE AND HYBRIDOMA MODULEP30EY011373 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI Irina A Pikuleva · 1997 to 2026
$17.7M
RESOURCE/SERVICE CORE C - MOLECULAR INFORMATICS MODULEP30EY025585 · NEI · CLEVELAND CLINIC LERNER COM-CWRU · PI BELA ANAND-APTE · 2016 to 2026
$7.7M
BLR&D Research Career Scientist AwardIK6BX005233 · VA · LOUIS STOKES CLEVELAND VA MEDICAL CENTER · PI NEAL S. PEACHEY · 2020 to 2026
–
Genetic Risk for AMD in Diverse Veteran PopulationsI01BX003364 · VA · LOUIS STOKES CLEVELAND VA MEDICAL CENTER · PI KONICKI, P. ERIC, PEACHEY, NEAL S. · 2016 to 2016
–
Diabetic Complications and Genetic Variants in the Million Veterans ProgramI01BX005831 · VA · VETERANS HEALTH ADMINISTRATION · PI PHILLIPS, LAWRENCE S, SUN, YAN · 2022 to 2025
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Deciphering Genetic and Environmental Influences on Visual Disorders in the Million Veteran ProgramI01BX004557 · VA · LOUIS STOKES CLEVELAND VA MEDICAL CENTER · PI PEACHEY, NEAL S. · 2019 to 2025
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BLRD VA I01 BX003364BLRD VA I01 BX004557BLRD VA I01 BX005831BLRD VA IK6 BX005233CSRD VA I01 CX001897NCATS NIH HHS UL1 TR002548NCATS NIH HHS UM1 TR004528NEI NIH HHS P30 EY011373NEI NIH HHS P30 EY025585
6 · The paper itself

Abstract

Fuchs endothelial corneal dystrophy (FECD) is a leading indication for corneal transplantation, but its molecular etiology remains poorly understood. We performed genome-wide association studies (GWAS) of FECD in the Million Veteran Program followed by multi-ancestry meta-analysis with the previous largest FECD GWAS, for a total of 3970 cases and 333,794 controls. We confirm the previous four loci, and identify eight novel loci: SSBP3, THSD7A, LAMB1, PIDD1, RORA, HS3ST3B1, LAMA5, and COL18A1. We further confirm the TCF4 locus in GWAS for admixed African and Hispanic/Latino ancestries and show an enrichment of European-ancestry haplotypes at TCF4 in FECD cases. Among the novel associations are low frequency missense variants in laminin genes LAMA5 and LAMB1 which, together with previously reported LAMC1, form laminin-511 (LM511). AlphaFold 2 protein modeling, validated through homology, suggests that mutations at LAMA5 and LAMB1 may destabilize LM511 by altering inter-domain interactions or extracellular matrix binding. Finally, phenome-wide association scans and colocalization analyses suggest that the TCF4 CTG18.1 trinucleotide repeat expansion leads to dysregulation of ion transport in the corneal endothelium and has pleiotropic effects on renal function.

Indexed as

Fuchs' Endothelial DystrophyCollagenGenome-Wide Association StudyHumansLamininTranscription Factor 4CollagenLamininTranscription Factor 4

Identifiers

PMID38582945
PMCPMC10998918
OpenAlexW4394013886

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.