Evidence map›Paper›PMID 38582862›Full record

ArticleNature communications2024

Structure and mechanisms of transport of human Asc1/CD98hc amino acid transporter.

Josep Rullo-Tubau, Maria Martinez-Molledo, Paola Bartoccioni, Ignasi Puch-Giner, Ángela Arias, Suwipa Saen-Oon, Camille Stephan-Otto Attolini, Rafael Artuch, Lucía Díaz, Víctor Guallar and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Josep Rullo-Tubau *Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Baldiri Reixac 10, E-08028, Barcelona, Spain.ORCID http://orcid.org/0000-0002-5305-1958
Maria Martinez-Molledo *Structural Biology Programme, Spanish National Cancer Research Centre (CNIO), Melchor Fernández Almagro, 3, E-28029, Madrid, Spain.ORCID http://orcid.org/0000-0002-2948-0891
Paola BartoccioniInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Baldiri Reixac 10, E-08028, Barcelona, Spain.ORCID http://orcid.org/0000-0001-8835-8450
Ignasi Puch-GinerElectronic and atomic protein modelling group, Barcelona Supercomputing Center, Plaça d'Eusebi Güell, 1-3, E-08034, Barcelona, Spain.ORCID http://orcid.org/0000-0003-3899-3995
Ángela AriasClinical Biochemistry Department, Sant Joan de Déu Research Institute, Pg. de Sant Joan de Déu, 2, E-08950, Esplugues de Llobregat, Spain.
Suwipa Saen-OonNostrum Biodiscovery, Av. de Josep Tarradellas, 8-10, E-08029, Barcelona, Spain.ORCID http://orcid.org/0000-0002-4101-245X
Camille Stephan-Otto AttoliniInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Baldiri Reixac 10, E-08028, Barcelona, Spain.ORCID http://orcid.org/0000-0001-8045-320X
Rafael ArtuchThe Spanish Center of Rare Diseases (CIBERER U-731), Baldiri Reixac 10, E-08028, Barcelona, Spain.ORCID http://orcid.org/0000-0002-3422-9685
Lucía DíazNostrum Biodiscovery, Av. de Josep Tarradellas, 8-10, E-08029, Barcelona, Spain.ORCID http://orcid.org/0000-0001-8850-2571
Víctor GuallarElectronic and atomic protein modelling group, Barcelona Supercomputing Center, Plaça d'Eusebi Güell, 1-3, E-08034, Barcelona, Spain.ORCID http://orcid.org/0000-0002-4580-1114
Ekaitz Errasti-MurugarrenThe Spanish Center of Rare Diseases (CIBERER U-731), Baldiri Reixac 10, E-08028, Barcelona, Spain. ekaitz_errasti@ub.edu.ORCID http://orcid.org/0000-0002-6054-7900
Manuel PalacínInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Baldiri Reixac 10, E-08028, Barcelona, Spain. manuel.palacin@irbbarcelona.org.ORCID http://orcid.org/0000-0002-8670-293X
Oscar LlorcaStructural Biology Programme, Spanish National Cancer Research Centre (CNIO), Melchor Fernández Almagro, 3, E-28029, Madrid, Spain. ollorca@cnio.es.ORCID http://orcid.org/0000-0001-5705-0699
Spanish Multiple Sclerosis Network · ESBarcelona Supercomputing Center · ESInstitute for Research in Biomedicine · ESSpanish National Cancer Research Centre · ESBellvitge University Hospital · ESSant Joan de Déu Research Foundation · ES

Funding

"la Caixa" Foundation (Caixa Foundation) LCF/PR/HR20/52400017
6 · The paper itself

Abstract

Recent cryoEM studies elucidated details of the structural basis for the substrate selectivity and translocation of heteromeric amino acid transporters. However, Asc1/CD98hc is the only neutral heteromeric amino acid transporter that can function through facilitated diffusion, and the only one that efficiently transports glycine and D-serine, and thus has a regulatory role in the central nervous system. Here we use cryoEM, ligand-binding simulations, mutagenesis, transport assays, and molecular dynamics to define human Asc1/CD98hc determinants for substrate specificity and gain insights into the mechanisms that govern substrate translocation by exchange and facilitated diffusion. The cryoEM structure of Asc1/CD98hc is determined at 3.4-3.8 Å resolution, revealing an inward-facing semi-occluded conformation. We find that Ser 246 and Tyr 333 are essential for Asc1/CD98hc substrate selectivity and for the exchange and facilitated diffusion modes of transport. Taken together, these results reveal the structural bases for ligand binding and transport features specific to human Asc1.

Indexed as

Amino Acid Transport SystemsFusion Regulatory Protein 1, Heavy ChainHumansLigandsMolecular Dynamics SimulationTranscription FactorsAmino Acid Transport SystemsFusion Regulatory Protein 1, Heavy ChainLigandsSLC3A2 protein, humanTranscription FactorsTRIP4 protein, human

Identifiers

PMID38582862
PMCPMC10998858
OpenAlexW4394014100

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.