Evidence map›Paper›PMID 38581360›Full record

ArticleDatabase : the journal of biological databases and curation2024

Towards building a trustworthy pipeline integrating Neuroscience Gateway and Open Science Chain.

S Sivagnanam, S Yeu, K Lin, S Sakai, F Garzon, K Yoshimoto, K Prantzalos, D P Upadhyaya, A Majumdar, S S Sahoo and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Database : the journal of biological databases and curation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

S SivagnanamSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.ORCID 0000-0002-9250-7823
S YeuSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
K LinSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
S SakaiSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
F GarzonSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
K YoshimotoSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
K PrantzalosSchool of Medicine, Case Western University, 9501 Euclid Ave, Cleveland, OH 44106, USA.
D P UpadhyayaSchool of Medicine, Case Western University, 9501 Euclid Ave, Cleveland, OH 44106, USA.
A MajumdarSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
S S SahooSchool of Medicine, Case Western University, 9501 Euclid Ave, Cleveland, OH 44106, USA.
W W LyttonBiomedical Engineering, SUNY Downstate Health Sciences University, 450 Clarkson Avenue, Brooklyn, NY 11203, USA.

Funding

Clinical and Translational Science Collaborative of ClevelandUL1TR002548 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI MCCOMSEY, GRACE A · 2018 to 2022
$35.5M
Clinical and Translational Science Collaborative of Northern Ohio, Catalyzing Linkages to Equity in Health (CLE Health)UM1TR004528 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI GRACE A MCCOMSEY · 2023 to 2026
$32.1M
Neuroscience Gateway to Enable Dissemination of Computational And Data Processing Tools And Software.U24EB029005 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MAJUMDAR, AMITAVA · 2019 to 2023
$2.2M
CRCNS:NeuroBridge: Connecting Big Data for Reproducible Clinical NeuroscienceR01DA053028 · NIDA · OHIO STATE UNIVERSITY · PI AMBITE, JOSE LUIS, RAJASEKAR, ARCOT · 2020 to 2023
$1.7M
Clinical and Translational Science Collaborative of Cleveland, which is funded by the NIH, National Center for Advancing Translational Sciences, Clinical and Translational Science Award UL1TR002548NCATS NIH HHS UL1 TR002548NCATS NIH HHS UM1 TR004528NIBIB NIH HHS 5U24EB029005-05NIBIB NIH HHS U24 EB029005NIDA NIH HHS R01 DA053028NIDA NIH HHS R01DA053028NSFUS Department of Defense (DOD)
6 · The paper itself

Abstract

When the scientific dataset evolves or is reused in workflows creating derived datasets, the integrity of the dataset with its metadata information, including provenance, needs to be securely preserved while providing assurances that they are not accidentally or maliciously altered during the process. Providing a secure method to efficiently share and verify the data as well as metadata is essential for the reuse of the scientific data. The National Science Foundation (NSF) funded Open Science Chain (OSC) utilizes consortium blockchain to provide a cyberinfrastructure solution to maintain integrity of the provenance metadata for published datasets and provides a way to perform independent verification of the dataset while promoting reuse and reproducibility. The NSF- and National Institutes of Health (NIH)-funded Neuroscience Gateway (NSG) provides a freely available web portal that allows neuroscience researchers to execute computational data analysis pipeline on high performance computing resources. Combined, the OSC and NSG platforms form an efficient, integrated framework to automatically and securely preserve and verify the integrity of the artifacts used in research workflows while using the NSG platform. This paper presents the results of the first study that integrates OSC-NSG frameworks to track the provenance of neurophysiological signal data analysis to study brain network dynamics using the Neuro-Integrative Connectivity tool, which is deployed in the NSG platform. Database URL: https://www.opensciencechain.org.

Indexed as

NeurosciencesPublicationsDatabases, FactualMetadataReproducibility of Results

Identifiers

PMID38581360
PMCPMC10998337

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.