Evidence map›Paper›PMID 38580649›Full record

ArticleNature communications2024

Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells.

Kosuke Yamaguchi, Xiaoying Chen, Brianna Rodgers, Fumihito Miura, Pavel Bashtrykov, Frédéric Bonhomme, Catalina Salinas-Luypaert, Deis Haxholli, Nicole Gutekunst, Bihter Özdemir Aygenli and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
9.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 41 citations in OpenAlex.

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  11. Structure-guided design of 7-azaindole DNMT1 inhibitors active against hypomethylating agent-resistant acute myeloid leukemia.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  15. Article
  16. Epigenetic alterations in Myeloid Malignancies.Advances in experimental medicine and biology · 2026
    Review
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 3 countries.

Kosuke YamaguchiUniversité Paris Cité, CNRS, Epigenetics and Cell Fate, Paris, France. yamako0801@icloud.com.ORCID http://orcid.org/0000-0003-2926-9444
Xiaoying ChenUniversité Paris Cité, CNRS, Epigenetics and Cell Fate, Paris, France.
Brianna RodgersUniversité Paris Cité, CNRS, Epigenetics and Cell Fate, Paris, France.
Fumihito MiuraDepartment of Biochemistry, Kyushu University Graduate School of Medical Sciences, Fukuoka, Japan.ORCID http://orcid.org/0000-0003-2656-486X
Pavel BashtrykovInstitute of Biochemistry and Technical Biochemistry, Department of Biochemistry, University of Stuttgart, Stuttgart, Germany.
Frédéric BonhommeInstitut Pasteur, Université Paris Cité, Epigenetic Chemical Biology, CNRS, UMR 3523, Chem4Life, Paris, France.ORCID http://orcid.org/0000-0001-6797-289X
Catalina Salinas-LuypaertInstitut Curie, PSL Research University, CNRS, UMR 144, Paris, France.ORCID http://orcid.org/0000-0003-1194-4536
Deis HaxholliFaculty of Biology and Center for Molecular Biosystems (BioSysM), Human Biology and BioImaging, Ludwig-Maximilians-Universität München, Munich, Germany.
Nicole GutekunstInstitute of Biochemistry and Technical Biochemistry, Department of Biochemistry, University of Stuttgart, Stuttgart, Germany.
Bihter Özdemir AygenliInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-0234-7169
Laure FerryUniversité Paris Cité, CNRS, Epigenetics and Cell Fate, Paris, France.
Olivier KirshUniversité Paris Cité, CNRS, Epigenetics and Cell Fate, Paris, France.ORCID http://orcid.org/0000-0001-6200-5681
Marthe LaisnéUniversité Paris Cité, CNRS, Epigenetics and Cell Fate, Paris, France.
Andrea ScelfoInstitut Curie, PSL Research University, CNRS, UMR 144, Paris, France.ORCID http://orcid.org/0000-0001-8767-0688
Enes UgurFaculty of Biology and Center for Molecular Biosystems (BioSysM), Human Biology and BioImaging, Ludwig-Maximilians-Universität München, Munich, Germany.
Paola B ArimondoInstitut Pasteur, Université Paris Cité, Epigenetic Chemical Biology, CNRS, UMR 3523, Chem4Life, Paris, France.
Heinrich LeonhardtFaculty of Biology and Center for Molecular Biosystems (BioSysM), Human Biology and BioImaging, Ludwig-Maximilians-Universität München, Munich, Germany.ORCID http://orcid.org/0000-0002-5086-6449
Masato T KanemakiDepartment of Chromosome Science, National Institute of Genetics, Research Organization of Information and Systems (ROIS), Mishima, Shizuoka, Japan.ORCID http://orcid.org/0000-0002-7657-1649
Till BartkeInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-6584-2140
Daniele FachinettiInstitut Curie, PSL Research University, CNRS, UMR 144, Paris, France.ORCID http://orcid.org/0000-0002-8795-6771
Albert JeltschInstitute of Biochemistry and Technical Biochemistry, Department of Biochemistry, University of Stuttgart, Stuttgart, Germany.ORCID http://orcid.org/0000-0001-6113-9290
Takashi ItoDepartment of Biochemistry, Kyushu University Graduate School of Medical Sciences, Fukuoka, Japan.ORCID http://orcid.org/0000-0001-6097-2803
Pierre-Antoine DefossezUniversité Paris Cité, CNRS, Epigenetics and Cell Fate, Paris, France. pierre-antoine.defossez@cnrs.fr.ORCID http://orcid.org/0000-0002-6463-9263
Centre National de la Recherche Scientifique · FRLudwig-Maximilians-Universität München · DEUniversity of Stuttgart · DEHelmholtz Zentrum München · DEKyushu University · JPNational Institute of Genetics · JP

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-15-CE12-0012-01Institut National Du Cancer (French National Cancer Institute) INCa PLBio 2015-1-PLBio-01-DR A-1MEXT | Japan Society for the Promotion of Science (JSPS) 202260432
6 · The paper itself

Abstract

DNA methylation is an essential epigenetic chromatin modification, and its maintenance in mammals requires the protein UHRF1. It is yet unclear if UHRF1 functions solely by stimulating DNA methylation maintenance by DNMT1, or if it has important additional functions. Using degron alleles, we show that UHRF1 depletion causes a much greater loss of DNA methylation than DNMT1 depletion. This is not caused by passive demethylation as UHRF1-depleted cells proliferate more slowly than DNMT1-depleted cells. Instead, bioinformatics, proteomics and genetics experiments establish that UHRF1, besides activating DNMT1, interacts with DNMT3A and DNMT3B and promotes their activity. In addition, we show that UHRF1 antagonizes active DNA demethylation by TET2. Therefore, UHRF1 has non-canonical roles that contribute importantly to DNA methylation homeostasis; these findings have practical implications for epigenetics in health and disease.

Indexed as

DNA MethylationNeoplasmsCCAAT-Enhancer-Binding ProteinsChromatinDNA (Cytosine-5-)-Methyltransferase 1HumansUbiquitin-Protein LigasesCCAAT-Enhancer-Binding ProteinsChromatinDNA (Cytosine-5-)-Methyltransferase 1Ubiquitin-Protein LigasesUHRF1 protein, human

Identifiers

PMID38580649
PMCPMC10997609
OpenAlexW4393999151

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.