Evidence map›Paper›PMID 38580345›Full record

ArticleRMD open2024

The HLA region in ANCA-associated vasculitis: characterisation of genetic associations in a Scandinavian patient population.

Christian Lundtoft, Ann Knight, Jennifer R S Meadows, Åsa Karlsson, Solbritt Rantapää-Dahlqvist, Ewa Berglin, Øyvind Palm, Hilde Haukeland, Iva Gunnarsson, Annette Bruchfeld and 10 more

Open access · goldAbstract read
In one paragraph

Article in RMD open, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 10 institutions in 4 countries.

Christian LundtoftDepartment of Medical Sciences, Uppsala University, Uppsala, Sweden.
Ann KnightDepartment of Medical Sciences, Uppsala University, Uppsala, Sweden.
Jennifer R S MeadowsDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Åsa KarlssonDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Solbritt Rantapää-DahlqvistDepartment of Public Health and Clinical Medicine, Umeå University, Umeå, Sweden.ORCID 0000-0001-8259-3863
Ewa BerglinDepartment of Public Health and Clinical Medicine, Umeå University, Umeå, Sweden.
Øyvind PalmDepartment of Rheumatology, Oslo University Hospital, Oslo, Norway.
Hilde HaukelandDepartment of Rheumatology, Martina Hansens Hospital, Sandvika, Norway.
Iva GunnarssonDepartment of Medicine, Karolinska Institutet, Stockholm, Sweden.
Annette BruchfeldDepartment of Health, Medicine and Caring Sciences, Linköping University, Linköping, Sweden.
Mårten SegelmarkDepartment of Clinical Sciences, Lund University and Skåne University Hospital, Lund, Sweden.
Sophie OhlssonDepartment of Clinical Sciences, Lund University and Skåne University Hospital, Lund, Sweden.
Aladdin J MohammadDepartment of Clinical Sciences, Lund University and Skåne University Hospital, Lund, Sweden.ORCID 0000-0002-7169-6936
Per ErikssonDepartment of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden.
Peter SöderkvistDepartment of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden.
Lars RonnblomDepartment of Medical Sciences, Uppsala University, Uppsala, Sweden.
Roald OmdalResearch Department, Stavanger University Hospital, Stavanger, Norway.
Roland JonssonBroegelmann Research Laboratory, Department of Clinical Science, University of Bergen, Bergen, Hordaland, Norway.ORCID 0000-0002-9588-0260
Kerstin Lindblad-TohDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Johanna DahlqvistDepartment of Medical Sciences, Uppsala University, Uppsala, Sweden johanna.dahlqvist@imbim.uu.se.ORCID 0000-0002-6283-644X
Uppsala University · SELinköping University · SELund University · SEUmeå University · SEBroad Institute · USKarolinska University Hospital · SEMartina Hansens Hospital · NOOslo University Hospital · NOStavanger University Hospital · NOUniversity of Bergen · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveThe antineutrophil cytoplasmic antibody (ANCA)-associated vasculitides (AAV) are inflammatory disorders with ANCA autoantibodies recognising either proteinase 3 (PR3-AAV) or myeloperoxidase (MPO-AAV). PR3-AAV and MPO-AAV have been associated with distinct loci in the human leucocyte antigen (HLA) region. While the association between MPO-AAV and HLA has been well characterised in East Asian populations where MPO-AAV is more common, studies in populations of European descent are limited. The aim of this study was to thoroughly characterise associations to the HLA region in Scandinavian patients with PR3-AAV as well as MPO-AAV.

methodsGenotypes of single-nucleotide polymorphisms (SNPs) located in the HLA region were extracted from a targeted exome-sequencing dataset comprising Scandinavian AAV cases and controls. Classical HLA alleles were called using xHLA. After quality control, association analyses were performed of a joint SNP/classical HLA allele dataset for cases with PR3-AAV (n=411) and MPO-AAV (n=162) versus controls (n=1595). Disease-associated genetic variants were analysed for association with organ involvement, age at diagnosis and relapse, respectively.

resultsPR3-AAV was significantly associated with both HLA-DPB1*04:01 and rs1042335 at the

conclusionsThe association to the HLA region was distinct in Scandinavian cases with MPO-AAV compared with cases of East Asian descent. In PR3-AAV, the two separate signals of association to the

Indexed as

Antibodies, Antineutrophil CytoplasmicAnti-Neutrophil Cytoplasmic Antibody-Associated VasculitisGenotypeHumansMyeloblastinRecurrenceAntibodies, Antineutrophil CytoplasmicMyeloblastinAutoimmune DiseasesGranulomatosis with polyangiitisPolymorphism, GeneticSystemic vasculitis

Identifiers

PMID38580345
PMCPMC11002376
OpenAlexW4393989312

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.