Evidence map›Paper›PMID 38578285›Full record

ArticleThe Journal of cell biology2024

IRE1α recognizes a structural motif in cholera toxin to activate an unfolded protein response.

Mariska S Simpson, Heidi De Luca, Sarah Cauthorn, Phi Luong, Namrata D Udeshi, Tanya Svinkina, Stefanie S Schmieder, Steven A Carr, Michael J Grey, Wayne I Lencer

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Mariska S SimpsonDivision of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston MA, USA.ORCID 0000-0002-0133-7209
Heidi De LucaDivision of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston MA, USA.ORCID 0009-0003-8558-4649
Sarah CauthornDivision of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston MA, USA.ORCID 0009-0002-6046-5742
Phi LuongDivision of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston MA, USA.ORCID 0000-0003-1642-7415
Namrata D UdeshiBroad Institute of MIT and Harvard , Cambridge, MA, USA.ORCID 0000-0001-5312-1402
Tanya SvinkinaBroad Institute of MIT and Harvard , Cambridge, MA, USA.ORCID 0009-0005-8300-3403
Stefanie S SchmiederDivision of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston MA, USA.ORCID 0000-0002-3696-9468
Steven A CarrBroad Institute of MIT and Harvard , Cambridge, MA, USA.ORCID 0000-0002-7203-4299
Michael J GreyDivision of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston MA, USA.ORCID 0000-0001-7805-7398
Wayne I LencerDivision of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston MA, USA.ORCID 0000-0001-7346-2730
Boston Children's Hospital · USBroad Institute · US

Funding

STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JONATHAN C KAGAN · 1986 to 2026
$32.4M
COngenital Diarrhea and Enteropathy (PediCODE) Consortium and BioRepositoryRC2DK118640 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI James Richard Goldenring, Izumi Kaji · 2019 to 2026
$14.8M
Mechanism of action for the epithelial-specific ER stress sensor IRE1β in regulating intestinal homeostasis and host defenseR01DK048106 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI WAYNE I LENCER · 1993 to 2026
$9.6M
IRE1beta links the gut microbiota and epithelial differentiation to protect against colitisK01DK119414 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI GREY, MICHAEL J · 2019 to 2023
$781k
NIDDK NIH HHS K01 DK119414NIDDK NIH HHS P30 DK034854NIDDK NIH HHS R01 DK048106NIDDK NIH HHS RC2 DK118640NIH HHS R01DK048106
6 · The paper itself

Abstract

IRE1α is an endoplasmic reticulum (ER) sensor that recognizes misfolded proteins to induce the unfolded protein response (UPR). We studied cholera toxin (CTx), which invades the ER and activates IRE1α in host cells, to understand how unfolded proteins are recognized. Proximity labeling colocalized the enzymatic and metastable A1 segment of CTx (CTxA1) with IRE1α in live cells, where we also found that CTx-induced IRE1α activation enhanced toxicity. In vitro, CTxA1 bound the IRE1α lumenal domain (IRE1αLD), but global unfolding was not required. Rather, the IRE1αLD recognized a seven-residue motif within an edge β-strand of CTxA1 that must locally unfold for binding. Binding mapped to a pocket on IRE1αLD normally occupied by a segment of the IRE1α C-terminal flexible loop implicated in IRE1α oligomerization. Mutation of the CTxA1 recognition motif blocked CTx-induced IRE1α activation in live cells, thus linking the binding event with IRE1α signal transduction and induction of the UPR.

Indexed as

Cholera ToxinEndoribonucleasesProtein Serine-Threonine KinasesUnfolded Protein ResponseAnimalsCell LineEndoplasmic Reticulum StressHumansMiceSignal TransductionCholera ToxinEndoribonucleasesERN1 protein, humanProtein Serine-Threonine Kinases

Identifiers

PMID38578285
PMCPMC10996581
OpenAlexW4393993617

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.