Evidence map›Paper›PMID 38578013›Full record

ArticleGenetics and molecular biology2024

Mitochondrion genomes of seven species of the endangered genus Sporophila (Passeriformes: Thraupidae).

Amanda Alves de Melo-Ximenes, Leonardo Carlos Jeronimo Corvalán, Larissa Resende Carvalho, Thalita Alves Mangini, Mariane Brom Sobreiro, Lucas Donizetti Vieira, Renata de Oliveira Dias, Carlos de Melo E Silva Neto, Mariana Pires de Campos Telles, Rhewter Nunes

Abstract read
In one paragraph

Article in Genetics and molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Amanda Alves de Melo-XimenesUniversidade Federal de Goiás, Instituto de Ciências Biológicas (ICB), Laboratório de Genética & Biodiversidade (LGBio), Goiânia, GO, Brazil.ORCID http://orcid.org/0000-0001-6873-7322
Leonardo Carlos Jeronimo CorvalánUniversidade Federal de Goiás, Instituto de Ciências Biológicas (ICB), Laboratório de Genética & Biodiversidade (LGBio), Goiânia, GO, Brazil.ORCID http://orcid.org/0000-0002-3945-4208
Larissa Resende CarvalhoUniversidade Federal de Goiás, Instituto de Ciências Biológicas (ICB), Laboratório de Genética & Biodiversidade (LGBio), Goiânia, GO, Brazil.ORCID http://orcid.org/0000-0003-4385-8296
Thalita Alves ManginiUniversidade Federal de Goiás, Instituto de Ciências Biológicas (ICB), Laboratório de Genética & Biodiversidade (LGBio), Goiânia, GO, Brazil.
Mariane Brom SobreiroUniversidade Federal de Goiás, Instituto de Ciências Biológicas (ICB), Laboratório de Genética & Biodiversidade (LGBio), Goiânia, GO, Brazil.ORCID http://orcid.org/0000-0002-9459-1459
Lucas Donizetti VieiraInstituto Tecnológico Vale Desenvolvimento Sustentável, Belém, PA, Brazil.ORCID http://orcid.org/0000-0002-5112-5802
Renata de Oliveira DiasUniversidade Federal de Goiás, Instituto de Ciências Biológicas (ICB), Laboratório de Genética & Biodiversidade (LGBio), Goiânia, GO, Brazil.ORCID http://orcid.org/0000-0001-6729-5980
Carlos de Melo E Silva NetoUniversidade Estadual de Goiás, Instituto Acadêmico de Ciências da Saúde e Biológicas (IACSB), Laboratório de Bioinformática e Biodiversidade (LBB), Campus Oeste, Unidade Universitária de Iporá, Iporá, GO, Brazil.ORCID http://orcid.org/0000-0001-8624-3836
Mariana Pires de Campos TellesUniversidade Federal de Goiás, Instituto de Ciências Biológicas (ICB), Laboratório de Genética & Biodiversidade (LGBio), Goiânia, GO, Brazil.ORCID http://orcid.org/0000-0002-9023-0007
Rhewter NunesUniversidade Federal de Goiás, Instituto de Ciências Biológicas (ICB), Laboratório de Genética & Biodiversidade (LGBio), Goiânia, GO, Brazil.ORCID http://orcid.org/0000-0001-7770-7707

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We announce the mitochondrial genomes of seven species of the genus Sporophila (S. bouvreuil, S. iberaensis, S. melanogaster, S. minuta, S. nigrorufa, S. pileata, and S. ruficollis) which were validated by comparative genomic and phylogenetic analysis with related species. The mitochondrial genomes of seven passerines of the genus Sporophila were assembled (three complete and four nearly complete genomes) and were validated by reconstructing phylogenetic relations within Thraupidae. The complete mitogenomes ranged from 16,781 bp in S. ruficollis to 16,791 bp in S. minuta. We identified a conserved genome composition within all mitogenomes with 13 protein-coding genes, 22 tRNAs and two rRNAs. We observed a bias in the nucleotide composition and six mutational hotspots in Sporophila mitogenomes. Our mitogenome-based phylogenetic tree has S. minuta, S. maximiliani and S. nigricollis as sister species of the remaining species in the genus. We present new mitogenome sequences for seven Sporophila species, providing new genomic resources that may be useful for research on the evolution, comparative genetics, and conservation of this threatened group.

Identifiers

PMID38578013
PMCPMC10995768

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.