Evidence map›Paper›PMID 38577605›Full record

ArticleJournal of Cancer2024

Identification of PANoptosis-related predictors for prognosis and tumor microenvironment by multiomics analysis in glioma.

Fengzeng Sun, Miaomiao Liao, Zi Tao, Ruiqi Hu, Jun Qin, Weiwei Tao, Wentong Liu, Yiqi Wang, Guoliang Pi, Junrong Lei and 2 more

Open access · goldAbstract read
In one paragraph

Article in Journal of Cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Fengzeng SunCollege of Biomedicine and Health, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Miaomiao LiaoCollege of Biomedicine and Health, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Zi TaoCollege of Biomedicine and Health, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Ruiqi HuCollege of Biomedicine and Health, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Jun QinDepartment of Neurosurgery, Taihe Hospital, Hubei University of Medicine, Shiyan, China.
Weiwei TaoCollege of Biomedicine and Health, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Wentong LiuCollege of Biomedicine and Health, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Yiqi WangCollege of Biomedicine and Health, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Guoliang PiDepartment of Radiation Oncology, Hubei Cancer Hospital, Wuhan, China.
Junrong LeiDepartment of Neurosurgery, Taihe Hospital, Hubei University of Medicine, Shiyan, China.
Wendai BaoCollege of Biomedicine and Health, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Zhiqiang DongCollege of Biomedicine and Health, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Huazhong University of Science and Technology · CNHuazhong Agricultural University · CNHubei Cancer Hospital · CNHubei University of Medicine · CNTaihe Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PANoptosis is a newly described inflammatory programmed cell death, that highlights coordination between pyroptosis, apoptosis and necroptosis. However, the functions of PANoptosis-related genes in glioma progression still remain to be explored. This study aims to identify PANoptosis-related predictors that may be utilized for prognosis prediction and development of new therapeutic targets. Firstly, bulk and single-cell RNA-seq (scRNA-seq) data of glioma patients were extracted from TCGA, CGGA and GEO database. Genetic analysis indicates a considerably high mutation frequency of PANoptosis-related genes (PANRGs) in glioma. Consensus clustering was applied to reveal different subtypes of glioma based on PANRGs. Two PANoptosis subtypes with distinct prognostic and TME characteristics were identified. Then, with LASSO-Cox regression analysis, four PANoptosis-related predictors (MYBL2, TUBA1C, C21orf62 and KCNIP2) were determined from bulk and scRNA-seq analysis. Predictive PANRG score model was established with these predictors and its correlation with tumor microenvironment (TME) was investigated. The results showed that patients with low PANRG score, had higher infiltration of anti-tumor immune cells, higher MSI score and lower TIDE score, which are more likely to benefit from immunotherapy. Further analysis identified 16 potential drugs associated with PANoptosis-related predictors. Moreover, the expression levels of four PANoptosis-related predictors were examined in clinical samples and the results were consistent with those analyzed in the database. Besides, we also confirmed the biological functions of two oncogenic predictors (MYBL2 and TUBA1C) by cell experiments, which revealed that knockdown of MYBL2 or TUBA1C could significantly inhibit the proliferation and migration of glioma cells. These findings highlight the prognostic value and biological functions of PANRGs in glioma, which may provide valuable insights for individualized treatment.

Indexed as

GliomaMYBL2PANoptosisPrognostic modelTUBA1CTumor immune microenvironment

Identifiers

PMID38577605
PMCPMC10988298
OpenAlexW4392815857

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.