Evidence map›Paper›PMID 38575584›Full record

ArticleNature communications2024

A genome-centric view of the role of the Acropora kenti microbiome in coral health and resilience.

Lauren F Messer, David G Bourne, Steven J Robbins, Megan Clay, Sara C Bell, Simon J McIlroy, Gene W Tyson

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Coral-associated microbiome dynamics under thermal and pollution stress.Conservation biology : the journal of the Society for Conservation Biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lauren F MesserCentre for Microbiome Research, School of Biomedical Sciences, Translational Research Institute, Queensland University of Technology, Brisbane, QLD, 4102, Australia. lauren.messer@stir.ac.uk.ORCID http://orcid.org/0000-0002-8335-2807
David G BourneCollege of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia.ORCID http://orcid.org/0000-0002-1492-8710
Steven J RobbinsAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, 4072, Australia.
Megan ClayCentre for Microbiome Research, School of Biomedical Sciences, Translational Research Institute, Queensland University of Technology, Brisbane, QLD, 4102, Australia.ORCID http://orcid.org/0000-0001-6283-384X
Sara C BellCollege of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia.ORCID http://orcid.org/0000-0003-1327-0360
Simon J McIlroyCentre for Microbiome Research, School of Biomedical Sciences, Translational Research Institute, Queensland University of Technology, Brisbane, QLD, 4102, Australia.ORCID http://orcid.org/0000-0003-3749-8730
Gene W TysonCentre for Microbiome Research, School of Biomedical Sciences, Translational Research Institute, Queensland University of Technology, Brisbane, QLD, 4102, Australia. gene.tyson@qut.edu.au.ORCID http://orcid.org/0000-0001-8559-9427

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial diversity has been extensively explored in reef-building corals. However, the functional roles of coral-associated microorganisms remain poorly elucidated. Here, we recover 191 bacterial and 10 archaeal metagenome-assembled genomes (MAGs) from the coral Acropora kenti (formerly A. tenuis) and adjacent seawater, to identify microbial functions and metabolic interactions within the holobiont. We show that 82 MAGs were specific to the A. kenti holobiont, including members of the Pseudomonadota, Bacteroidota, and Desulfobacterota. A. kenti-specific MAGs displayed significant differences in their genomic features and functional potential relative to seawater-specific MAGs, with a higher prevalence of genes involved in host immune system evasion, nitrogen and carbon fixation, and synthesis of five essential B-vitamins. We find a diversity of A. kenti-specific MAGs encode the biosynthesis of essential amino acids, such as tryptophan, histidine, and lysine, which cannot be de novo synthesised by the host or Symbiodiniaceae. Across a water quality gradient spanning 2° of latitude, A. kenti microbial community composition is correlated to increased temperature and dissolved inorganic nitrogen, with corresponding enrichment in molecular chaperones, nitrate reductases, and a heat-shock protein. We reveal mechanisms of A. kenti-microbiome-symbiosis on the Great Barrier Reef, highlighting the interactions underpinning the health of this keystone holobiont.

Indexed as

AnthozoaMicrobiotaResilience, PsychologicalAnimalsCoral ReefsMetagenomeNitrogenSymbiosisNitrogen

Identifiers

PMID38575584
PMCPMC10995205

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.