Evidence map›Paper›PMID 38573053›Full record

ArticleJournal of chemical information and modeling2024

Deconvolution and Analysis of the

Maxwell C Venetos, Masha Elkin, Connor Delaney, John F Hartwig, Kristin A Persson

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. pyIHM: Indirect Hard Modeling, in Python.Analytical chemistry · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Maxwell C VenetosDepartment of Materials Science and Engineering, University of California, Berkeley, California 94720, United States.ORCID 0000-0003-3468-2006
Masha ElkinDepartment of Chemistry, University of California, Berkeley, California 94720, United States.ORCID 0000-0002-4979-6420
Connor DelaneyDepartment of Chemistry, University of California, Berkeley, California 94720, United States.
John F HartwigDepartment of Chemistry, University of California, Berkeley, California 94720, United States.ORCID 0000-0002-4157-468X
Kristin A PerssonDepartment of Materials Science and Engineering, University of California, Berkeley, California 94720, United States.

Funding

Discovery and Development of Organic Reactions Catalyzed by Transition Metals Valuable for Medicinal ChemistryR35GM130387 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI John F Hartwig · 2019 to 2026
$7.1M
Acquisition of a Cryoprobe and Related Accessories for a 600 MHz NMR Spectrometer to Support Health Research Activities at the University of California, BerkeleyS10OD024998 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARTWIG, JOHN F · 2018 to 2018
$265k
Formation of C-C Bonds from Unactivated C(sp3)-H Bonds of Hydrosilanes Derived from Common Functional GroupsF32GM134579 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ELKIN, MASHA · 2019 to 2022
$194k
Feeding Machine Learning Algorithms with Mechanistic Data to Predict Outcomes of Copper-Catalyzed CouplingsF32GM140550 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI DELANEY, CONNOR · 2021 to 2022
$120k
NIGMS NIH HHS F32 GM134579NIGMS NIH HHS F32 GM140550NIGMS NIH HHS R35 GM130387NIH HHS S10 OD024998
6 · The paper itself

Abstract

Nuclear magnetic resonance (NMR) spectroscopy is an important analytical technique in synthetic organic chemistry, but its integration into high-throughput experimentation workflows has been limited by the necessity of manually analyzing the NMR spectra of new chemical entities. Current efforts to automate the analysis of NMR spectra rely on comparisons to databases of reported spectra for known compounds and, therefore, are incompatible with the exploration of new chemical space. By reframing the NMR spectrum of a reaction mixture as a joint probability distribution, we have used Hamiltonian Monte Carlo Markov Chain and density functional theory to fit the predicted NMR spectra to those of crude reaction mixtures. This approach enables the deconvolution and analysis of the spectra of mixtures of compounds without relying on reported spectra. The utility of our approach to analyze crude reaction mixtures is demonstrated with the experimental spectra of reactions that generate a mixture of isomers, such as Wittig olefination and C-H functionalization reactions. The correct identification of compounds in a reaction mixture and their relative concentrations is achieved with a mean absolute error as low as 1%.

Indexed as

Proton Magnetic Resonance SpectroscopyDensity Functional TheoryMarkov ChainsMonte Carlo Method

Identifiers

PMID38573053
PMCPMC11040730

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.