Evidence map›Paper›PMID 38572746›Full record

ArticleNucleic acids research2024

Protein G-quadruplex interactions and their effects on phase transitions and protein aggregation.

Bikash R Sahoo, Vojč Kocman, Nathan Clark, Nikhil Myers, Xiexiong Deng, Ee L Wong, Harry J Yang, Anita Kotar, Bryan B Guzman, Daniel Dominguez and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Cellular and systemic modifiers of alpha-synuclein proteostasis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
    Review
  3. G-Quadruplexes: Structural Diversity and Emerging Roles in Biomolecular Condensation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  4. Microprotein Regulates G-quadruplex Driven RNA Aggregation.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Contributions of Folded and Disordered Domains to RNA Binding by HNRNPR.bioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Bikash R SahooHoward Hughes Medical Institute, University of Michigan, Ann Arbor, MI, USA.
Vojč KocmanNational Institute of Chemistry, Ljubljana, Slovenia.ORCID 0000-0002-5644-7245
Nathan ClarkHoward Hughes Medical Institute, University of Michigan, Ann Arbor, MI, USA.
Nikhil MyersHoward Hughes Medical Institute, University of Michigan, Ann Arbor, MI, USA.
Xiexiong DengHoward Hughes Medical Institute, University of Michigan, Ann Arbor, MI, USA.
Ee L WongHoward Hughes Medical Institute, University of Michigan, Ann Arbor, MI, USA.
Harry J YangHoward Hughes Medical Institute, University of Michigan, Ann Arbor, MI, USA.ORCID 0009-0008-8758-5705
Anita KotarNational Institute of Chemistry, Ljubljana, Slovenia.
Bryan B GuzmanDepartment of Pharmacology, UNC Chapel Hill, USA.
Daniel DominguezDepartment of Pharmacology, UNC Chapel Hill, USA.
Janez PlavecNational Institute of Chemistry, Ljubljana, Slovenia.ORCID 0000-0003-1570-8602
James C A BardwellHoward Hughes Medical Institute, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0003-1683-1944
Howard Hughes Medical Institute · USNational Institute of Chemistry · SIUniversity of North Carolina at Chapel Hill · US

Funding

Protein Disorder as a Modifier of RNA Binding and RegulationR35GM142864 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Daniel Issac Dominguez · 2021 to 2026
$2.5M
Howard Hughes Medical InstituteNIGMS NIH HHS R35 GM142864NIH HHS R35GM142864
6 · The paper itself

Abstract

The SERF family of proteins were originally discovered for their ability to accelerate amyloid formation. Znf706 is an uncharacterized protein whose N-terminus is homologous to SERF proteins. We show here that human Znf706 can promote protein aggregation and amyloid formation. Unexpectedly, Znf706 specifically interacts with stable, non-canonical nucleic acid structures known as G-quadruplexes. G-quadruplexes can affect gene regulation and suppress protein aggregation; however, it is unknown if and how these two activities are linked. We find Znf706 binds preferentially to parallel G-quadruplexes with low micromolar affinity, primarily using its N-terminus, and upon interaction, its dynamics are constrained. G-quadruplex binding suppresses Znf706's ability to promote protein aggregation. Znf706 in conjunction with G-quadruplexes therefore may play a role in regulating protein folding. RNAseq analysis shows that Znf706 depletion specifically impacts the mRNA abundance of genes that are predicted to contain high G-quadruplex density. Our studies give insight into how proteins and G-quadruplexes interact, and how these interactions affect both partners and lead to the modulation of protein aggregation and cellular mRNA levels. These observations suggest that the SERF family of proteins, in conjunction with G-quadruplexes, may have a broader role in regulating protein folding and gene expression than previously appreciated.

Indexed as

DNA-Binding ProteinsG-QuadruplexesProtein AggregatesAmyloidHumansPhase TransitionProtein BindingProteinsRNA, MessengerAmyloidDNA-Binding ProteinsProtein AggregatesProteinsRNA, MessengerZNF706 protein, human

Identifiers

PMID38572746
PMCPMC11077067
OpenAlexW4393935552

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.