Evidence map›Paper›PMID 38572631›Full record

ArticleJournal of cell science2024

Identification of 30 transition fibre proteins in Trypanosoma brucei reveals a complex and dynamic structure.

Manu Ahmed, Richard Wheeler, Jiří Týč, Shahaan Shafiq, Jack Sunter, Sue Vaughan

Open access · hybridAbstract read
In one paragraph

Article in Journal of cell science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Manu AhmedDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford OX3 0BP, UK.ORCID 0000-0002-2841-1624
Richard WheelerPeter Medawar Building for Pathogen Research , University of Oxford, Oxford OX1 3SY, UK.ORCID 0000-0002-4270-8360
Jiří TýčBiology Centre CAS, Institute of Parasitology, Branišovská 1160/31, 370 05 České Budějovice, Czech Republic.
Shahaan ShafiqDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford OX3 0BP, UK.ORCID 0000-0002-1255-1817
Jack SunterDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford OX3 0BP, UK.ORCID 0000-0002-2836-9622
Sue VaughanDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford OX3 0BP, UK.ORCID 0000-0002-0925-4491
Oxford Brookes University · GBUniversity of Oxford · GB

Funding

Nigel Groome PhD studentshipOxford Brookes UniversityWellcome TrustWellcome Trust 211075/Z/18/Z
6 · The paper itself

Abstract

Transition fibres and distal appendages surround the distal end of mature basal bodies and are essential for ciliogenesis, but only a few of the proteins involved have been identified and functionally characterised. Here, through genome-wide analysis, we have identified 30 transition fibre proteins (TFPs) and mapped their arrangement in the flagellated eukaryote Trypanosoma brucei. We discovered that TFPs are recruited to the mature basal body before and after basal body duplication, with differential expression of five TFPs observed at the assembling new flagellum compared to the existing fixed-length old flagellum. RNAi-mediated depletion of 17 TFPs revealed six TFPs that are necessary for ciliogenesis and a further three TFPs that are necessary for normal flagellum length. We identified nine TFPs that had a detectable orthologue in at least one basal body-forming eukaryotic organism outside of the kinetoplastid parasites. Our work has tripled the number of known transition fibre components, demonstrating that transition fibres are complex and dynamic in their composition throughout the cell cycle, which relates to their essential roles in ciliogenesis and flagellum length regulation.

Indexed as

Protozoan ProteinsTrypanosoma brucei bruceiBasal BodiesCiliaConserved SequenceFlagellaGene Expression RegulationProtein TransportTime FactorsProtozoan ProteinsCiliaCiliogenesisDistal appendagesFlagellaTransition fibresTrypanosoma

Identifiers

PMID38572631
PMCPMC11190437
OpenAlexW4393941718

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.