Evidence map›Paper›PMID 38570691›Full record

ArticleNature2024

Improving prime editing with an endogenous small RNA-binding protein.

Jun Yan, Paul Oyler-Castrillo, Purnima Ravisankar, Carl C Ward, Sébastien Levesque, Yangwode Jing, Danny Simpson, Anqi Zhao, Hui Li, Weihao Yan and 9 more

Abstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 178 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
178citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

178 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Role of Chromatin-Associated RNAs in Eye Physiology and Pathology.Methods in molecular biology (Clifton, N.J.) · 2027
    Review
  4. Prime Editing: An Overview.Methods in molecular biology (Clifton, N.J.) · 2027
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

118 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Jun YanDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID 0009-0005-9139-3966
Paul Oyler-CastrilloLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Purnima RavisankarLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.ORCID 0000-0001-7799-4558
Carl C WardGladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA.
Sébastien LevesqueDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA, USA.
Yangwode JingDepartment of Chemistry, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-1692-6567
Danny SimpsonLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Anqi ZhaoDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.
Hui LiDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.
Weihao YanDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID 0009-0000-2509-1816
Laine GoudyGladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA.
Ralf SchmidtGladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA.ORCID 0000-0002-6697-0363
Sabrina C SolleyDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-2356-5608
Luke A GilbertArc Institute, Palo Alto, CA, USA.ORCID 0000-0001-5854-0825
Michelle M ChanDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID 0000-0001-9451-9716
Daniel E BauerDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA, USA.
Alexander MarsonGladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA.ORCID 0000-0002-2734-5776
Lance R ParsonsLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-8521-714X
Britt AdamsonDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA. badamson@princeton.edu.ORCID 0000-0002-9451-5819

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007388 · NIGMS · PRINCETON UNIVERSITY · PI CRISTEA, ILEANA M. · 1985 to 2022
$27.4M
Center for Genomic Editing and Recording: Development and Application of Next-Generation Genome and Epigenome Editing Methods to Advance the Study and Treatment of Human DiseaseRM1HG009490 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI Brittany S. Adamson, Martin Joseph Ankrah Aryee · 2017 to 2026
$22.7M
Quantitavie and Computational Biology Graduate ProgramT32HG003284 · NHGRI · PRINCETON UNIVERSITY · PI Joshua Michael Akey, Stanislav Y. Shvartsman · 2004 to 2026
$9.9M
Stem Cell and Transplantation BiologyU54DK106829 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DEREK L STIREWALT · 2015 to 2026
$9.1M
PROMINENT - UCSFOT2CA278665 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ALLAN BALMAIN · 2022 to 2026
$8.9M
Spatial multiomic mapping of gene function with CRISPRoffUM1HG012660 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Luke Gilbert · 2022 to 2026
$8.2M
Rectifying splicing mutations in blood disorders by gene editingR01HL150669 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI BAUER, DANIEL EVAN, WOLFE, SCOT A · 2020 to 2023
$3.5M
Mapping the DNA damage response in human cells with high-resolution functional genomicsR35GM138167 · NIGMS · PRINCETON UNIVERSITY · PI Brittany S. Adamson · 2020 to 2026
$2.4M
A GENETIC INTERACTION MAP OF THE HUMAN NUCLEUSDP2CA239597 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GILBERT, LUKE · 2018 to 2018
$2.4M
Expanding the scope of protein degradation and stability using chemoproteomic platformsK00CA245718 · NCI · J. DAVID GLADSTONE INSTITUTES · PI WARD, CARL · 2021 to 2024
$371k
NCI NIH HHS DP2 CA239597NCI NIH HHS K00 CA245718NCI NIH HHS OT2 CA278665NHGRI NIH HHS RM1 HG009490NHGRI NIH HHS T32 HG003284NHGRI NIH HHS UM1 HG012660NHLBI NIH HHS R01 HL150669NIDDK NIH HHS U54 DK106829NIGMS NIH HHS R35 GM138167NIGMS NIH HHS T32 GM007388
6 · The paper itself

Abstract

Prime editing enables the precise modification of genomes through reverse transcription of template sequences appended to the 3' ends of CRISPR-Cas guide RNAs

Indexed as

Gene EditingRNA-Binding ProteinsAutoantigensCRISPR-Cas SystemsHumansK562 CellsPeptide FragmentsPoly URNA, Guide, CRISPR-Cas SystemsRNA Polymerase IIIAutoantigensPeptide FragmentsPoly URNA-Binding ProteinsRNA, Guide, CRISPR-Cas SystemsRNA Polymerase IIISSB protein, human

Identifiers

PMID38570691
PMCPMC11023932

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.