Evidence map›Paper›PMID 38570609›Full record

ArticleCommunications biology2024

Convergent gene losses and pseudogenizations in multiple lineages of stomachless fishes.

Akira Kato, Supriya Pipil, Chihiro Ota, Makoto Kusakabe, Taro Watanabe, Ayumi Nagashima, An-Ping Chen, Zinia Islam, Naoko Hayashi, Marty Kwok-Shing Wong and 3 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
10.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. The genetic foundations of convergent traits.Nature reviews. Genetics · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. The molecular evolution of vertebrate organs.Nature ecology & evolution · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Akira KatoSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan. akirkato@bio.titech.ac.jp.ORCID 0000-0002-9083-1443
Supriya PipilDepartment of Marine Bioscience, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan.
Chihiro OtaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
Makoto KusakabeDepartment of Marine Bioscience, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan.
Taro WatanabeDepartment of Marine Bioscience, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan.
Ayumi NagashimaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.ORCID 0000-0002-0736-0928
An-Ping ChenDepartment of Physiology & Biomedical Engineering, Mayo Clinic College of Medicine & Science, Rochester, MN, USA.
Zinia IslamDepartment of Biological Sciences, Tokyo Institute of Technology, Yokohama, Japan.
Naoko HayashiDepartment of Biological Sciences, Tokyo Institute of Technology, Yokohama, Japan.
Marty Kwok-Shing WongDepartment of Marine Bioscience, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan.ORCID 0000-0002-3615-2087
Masayuki KomadaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.ORCID 0000-0002-2450-2107
Michael F RomeroDepartment of Physiology & Biomedical Engineering, Mayo Clinic College of Medicine & Science, Rochester, MN, USA.ORCID 0000-0002-1555-7835
Yoshio TakeiDepartment of Marine Bioscience, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan.ORCID 0000-0003-3004-8905
Tokyo Institute of Technology · JPThe University of Tokyo · JPMayo Clinic · USShizuoka University · JPToho University · JP

Funding

Molecular mechanisms of the electrogenic Na+ Bicarbonate Cotransporter (NBCe1)R01EY017732 · NEI · MAYO CLINIC ROCHESTER · PI ROMERO, MICHAEL F. · 2006 to 2010
$1.6M
Role of pH-mediated metabolic reprogramming in β cell failure in Type 2 Diabetes MellitusR01DK128844 · NIDDK · MAYO CLINIC ROCHESTER · PI MATVEYENKO, ALEKSEY V, ROMERO, MICHAEL F. · 2021 to 2023
$1.3M
Assaying and controlling the kidney cell function using a genetically encoded pH-sensorR21DK129897 · NIDDK · MAYO CLINIC ROCHESTER · PI ROMERO, MICHAEL F. · 2022 to 2023
$437k
NEI NIH HHS R01 EY017732NIDDK NIH HHS R01 DK128844NIDDK NIH HHS R21 DK129897
6 · The paper itself

Abstract

The regressive evolution of independent lineages often results in convergent phenotypes. Several teleost groups display secondary loss of the stomach, and four gastric genes, atp4a, atp4b, pgc, and pga2 have been co-deleted in agastric (stomachless) fish. Analyses of genotypic convergence among agastric fishes showed that four genes, slc26a9, kcne2, cldn18a, and vsig1, were co-deleted or pseudogenized in most agastric fishes of the four major groups. kcne2 and vsig1 were also deleted or pseudogenized in the agastric monotreme echidna and platypus, respectively. In the stomachs of sticklebacks, these genes are expressed in gastric gland cells or surface epithelial cells. An ohnolog of cldn18 was retained in some agastric teleosts but exhibited an increased non-synonymous substitution when compared with gastric species. These results revealed novel convergent gene losses at multiple loci among the four major groups of agastric fish, as well as a single gene loss in the echidna and platypus.

Indexed as

PlatypusTachyglossidaeAnimalsFishesPhylogenyStomach

Identifiers

PMID38570609
PMCPMC10991444
OpenAlexW4393901806

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.