Evidence map›Paper›PMID 38570405›Full record

ArticleJournal of computer-aided molecular design2024

Computational peptide discovery with a genetic programming approach.

Nicolas Scalzitti, Iliya Miralavy, David E Korenchan, Christian T Farrar, Assaf A Gilad, Wolfgang Banzhaf

Open access · hybridAbstract read
In one paragraph

Article in Journal of computer-aided molecular design, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Optimization of CEST MRI Reporter Protein Design Using Cation-Pi Networks.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  3. Machine learning-based development of Gadolinium binding peptides.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nicolas ScalzittiBEACON Center of Evolution in Action, Michigan State University, East Lansing, MI, USA.ORCID 0000-0002-2477-3054
Iliya MiralavyBEACON Center of Evolution in Action, Michigan State University, East Lansing, MI, USA.ORCID 0000-0003-2247-5253
David E KorenchanAthinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-6152-5896
Christian T FarrarAthinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-6623-8220
Assaf A GiladBEACON Center of Evolution in Action, Michigan State University, East Lansing, MI, USA. gilad@msu.edu.ORCID 0000-0002-7272-7570
Wolfgang BanzhafBEACON Center of Evolution in Action, Michigan State University, East Lansing, MI, USA. banzhafw@msu.edu.ORCID 0000-0002-6382-3245
Michigan State University · USHarvard University · US

Funding

Clinically Translatable MRI Reporter Genes and Imaging Methods with Ultra-High Specificity and SensitivityR01EB031008 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI CHRISTIAN T FARRAR · 2021 to 2026
$4.0M
Evolution and optimization of synthetic <READ/WRITE> function from and into cells using genetic programmingR01EB030565 · NIBIB · MICHIGAN STATE UNIVERSITY · PI BANZHAF, WOLFGANG, GILAD, ASSAF A · 2021 to 2024
$2.3M
Semi-synthetic, magneto-photonic circuit for non-invasive control of cellular functionR01EB031936 · NIBIB · CENTRAL MICHIGAN UNIVERSITY · PI GILAD, ASSAF A, HOCHGESCHWENDER, UTE H · 2021 to 2021
$2.0M
Upgrade of Console for 600 MHz MR SpectrometerS10OD023406 · OD · MASSACHUSETTS GENERAL HOSPITAL · PI CHENG, LEO L · 2017 to 2017
$600k
NIBIB NIH HHS R01 EB030565NIBIB NIH HHS R01 EB031008NIBIB NIH HHS R01 EB031936NIH HHS R01-EB031008NIH HHS S10 OD023406
6 · The paper itself

Abstract

The development of peptides for therapeutic targets or biomarkers for disease diagnosis is a challenging task in protein engineering. Current approaches are tedious, often time-consuming and require complex laboratory data due to the vast search spaces that need to be considered. In silico methods can accelerate research and substantially reduce costs. Evolutionary algorithms are a promising approach for exploring large search spaces and can facilitate the discovery of new peptides. This study presents the development and use of a new variant of the genetic-programming-based POET algorithm, called POET

Indexed as

AlgorithmsMagnetic Resonance ImagingHumansPeptidesPhantoms, ImagingPeptidesCEST MRIContrast agentEvolutionary algorithmGenetic programmingPeptide discoveryRegular expressions

Identifiers

PMID38570405
PMCPMC11416381
OpenAlexW4393852739

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.