Evidence map›Paper›PMID 38568352›Full record

ArticleForensic science, medicine, and pathology2024

InDEL instability in two different tumoral tissues and its forensic significance.

İpek Gürel, Faruk Aşıcıoğlu, Gökhan Ersoy, Özlem Bülbül, Tülin Öztürk, Gönül Filoğlu

Open access · hybridAbstract read
In one paragraph

Article in Forensic science, medicine, and pathology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

İpek GürelDepartment of Science, Institute of Forensic Sciences and Legal Medicine, İstanbul University- Cerrahpaşa, İstanbul, Türkiye.ORCID http://orcid.org/0009-0002-5691-0436
Faruk AşıcıoğluDepartment of Medical Sciences, Institute of Forensic Sciences and Legal Medicine, İstanbul University-Cerrahpaşa, İstanbul, Türkiye. fasicioglu@hotmail.com.ORCID http://orcid.org/0000-0003-1691-6171
Gökhan ErsoyDepartment of Medical Sciences, Institute of Forensic Sciences and Legal Medicine, İstanbul University-Cerrahpaşa, İstanbul, Türkiye.ORCID http://orcid.org/0000-0002-4594-7172
Özlem BülbülDepartment of Science, Institute of Forensic Sciences and Legal Medicine, İstanbul University- Cerrahpaşa, İstanbul, Türkiye.ORCID http://orcid.org/0000-0003-2920-7614
Tülin ÖztürkDepartment of Medical Pathology, Cerrahpaşa Faculty of Medicine, İstanbul University- Cerrahpaşa, İstanbul, Türkiye.ORCID http://orcid.org/0000-0001-6910-1131
Gönül FiloğluDepartment of Science, Institute of Forensic Sciences and Legal Medicine, İstanbul University- Cerrahpaşa, İstanbul, Türkiye.ORCID http://orcid.org/0000-0002-8807-317X
Istanbul University-Cerrahpaşa · TRHaliç University · TR

Funding

Istanbul Üniversitesi-Cerrahpasa 35728
6 · The paper itself

Abstract

There may be cases where malignant tumor samples can be used for forensic DNA profiling studies. STRs are the first systems preferred in forensic science laboratories for identification purposes. However, genetic instability in tumoral tissues causes STR polymorphism to change, leading to erroneous results. On the other hand, insertion/deletion polymorphism (InDels) are used as genetic markers in forensic science, as they have features that make both STR and SNPs preferable. Although previous studies approved that STR instability is observed in many different tumors, there are only a few studies that have displayed the instability of InDels in tumoral tissues before. In this study, it was aimed to determine whether instability is observed in formalin-fixed paraffin-embedded breast and thyroid tumoral tissues at 36plex InDel Panel. A total of 47 cases, 26 of which were diagnosed as breast cancer and 21 as thyroid cancer, were included in the study. In 21 of 26 (80.76%) breast cancers mutational changes were observed, however only 6 of 21 (28.57%) thyroid carcinoma cases displayed instability.Moreover, in these six cases, mutations were detected at only 1 or 2 loci. The most common change in both tissues was loss of heterozygosity. These findings suggest that paraffin embedded tissues of thyroid tumor can be used in cases of forensic genetic identification, however paraffin embedded breast cancer tissues should be examined with care. In conclusion, low InDel mutation rates compared to STR instability, make InDel analysis from paraffin blocks suitable for forensic genetic identification. However, researchers should keep in mind that there may be differences between the profiles of the tumoral tissues taken as reference and the actual case. In addition, by incorporating additional markers such as SNPs and microhaplotypes with low mutation rates into the study alongside Indels, researchers can significantly enhance the discrimination power in identification processes.

Indexed as

Breast NeoplasmsINDEL MutationThyroid NeoplasmsAdultAgedDNA FingerprintingFemaleForensic GeneticsHumansLoss of HeterozygosityMaleMiddle AgedParaffin EmbeddingForensic geneticsIdentificationInDelsInstabilitySTRTumoral tissue

Identifiers

PMID38568352
PMCPMC11790770
OpenAlexW4393899524

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.