Evidence map›Paper›PMID 38566417›Full record

ArticlePlant communications2024

ESR2-HDA6 complex negatively regulates auxin biosynthesis to delay callus initiation in Arabidopsis leaf explants during tissue culture.

Kyounghee Lee, Hobin Yoon, Ok-Sun Park, Jongbu Lim, Sang-Gyu Kim, Pil Joon Seo

Open access · goldAbstract read
In one paragraph

Article in Plant communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kyounghee LeeDepartment of Chemistry, Seoul National University, Seoul 08826, Korea; Research Institute of Basic Sciences, Seoul National University, Seoul 08826, Korea.
Hobin YoonInterdisciplinary Program in Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
Ok-Sun ParkPlant Genomics and Breeding Institute, Seoul National University, Seoul 08826, Korea.
Jongbu LimDepartment of Biological Sciences, KAIST, Daejeon 34141, Korea.
Sang-Gyu KimDepartment of Biological Sciences, KAIST, Daejeon 34141, Korea.
Pil Joon SeoDepartment of Chemistry, Seoul National University, Seoul 08826, Korea; Research Institute of Basic Sciences, Seoul National University, Seoul 08826, Korea; Interdisciplinary Program in Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea; Plant Genomics and Breeding Institute, Seoul National University, Seoul 08826, Korea. Electronic address: pjseo1@snu.ac.kr.
Seoul National University · KRKorea Advanced Institute of Science and Technology · KR

Funding

Non-US Government Research Support type
6 · The paper itself

Abstract

Plants exhibit an astonishing ability to regulate organ regeneration upon wounding. Excision of leaf explants promotes the biosynthesis of indole-3-acetic acid (IAA), which is polar-transported to excised regions, where cell fate transition leads to root founder cell specification to induce de novo root regeneration. The regeneration capacity of plants has been utilized to develop in vitro tissue culture technologies. Here, we report that IAA accumulation near the wounded site of leaf explants is essential for callus formation on 2,4-dichlorophenoxyacetic acid (2,4-D)-rich callus-inducing medium (CIM). Notably, a high concentration of 2,4-D does not compensate for the action of IAA because of its limited efflux; rather, it lowers IAA biosynthesis via a negative feedback mechanism at an early stage of in vitro tissue culture, delaying callus initiation. The auxin negative feedback loop in CIM-cultured leaf explants is mediated by an auxin-inducible APETALA2 transcription factor, ENHANCER OF SHOOT REGENERATION 2 (ESR2), along with its interacting partner HISTONE DEACETYLASE 6 (HDA6). The ESR2-HDA6 complex binds directly to, and removes the H3ac mark from, the YUCCA1 (YUC1), YUC7, and YUC9 loci, consequently repressing auxin biosynthesis and inhibiting cell fate transition on 2,4-D-rich CIM. These findings indicate that negative feedback regulation of auxin biosynthesis by ESR2 and HDA6 interferes with proper cell fate transition and callus initiation.

Indexed as

ArabidopsisArabidopsis ProteinsIndoleacetic AcidsPlant Leaves2,4-Dichlorophenoxyacetic AcidGene Expression Regulation, PlantHistone DeacetylasesTissue Culture TechniquesTranscription Factors2,4-Dichlorophenoxyacetic AcidArabidopsis ProteinsAT5G63110 protein, ArabidopsisDRNL protein, ArabidopsisHistone DeacetylasesIndoleacetic AcidsTranscription Factorsauxin biosynthesischromatin modificationESR2HDA6negative feedback loopYUCCA

Identifiers

PMID38566417
PMCPMC11287192
OpenAlexW4393491138

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.