Evidence map›Paper›PMID 38566056›Full record

ArticleMicrobial cell factories2024

Transcriptomic profiling of an evolved Yarrowia lipolytica strain: tackling hexanoic acid fermentation to increase lipid production from short-chain fatty acids.

Sergio Morales-Palomo, Clara Navarrete, José Luis Martínez, Cristina González-Fernández, Elia Tomás-Pejó

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Sergio Morales-PalomoBiotechnological Processes Unit, IMDEA Energy, Móstoles (Madrid), Spain.
Clara NavarreteDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads Building 223, Kgs. Lyngby, 2800, Denmark.
José Luis MartínezDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads Building 223, Kgs. Lyngby, 2800, Denmark.
Cristina González-FernándezBiotechnological Processes Unit, IMDEA Energy, Móstoles (Madrid), Spain.
Elia Tomás-PejóBiotechnological Processes Unit, IMDEA Energy, Móstoles (Madrid), Spain. elia.tomas@imdea.org.
IMDEA Energy Institute · ESTechnical University of Denmark · DKMadrid Institute for Advanced Studies · ES

Funding

Gobierno de Castilla y León CL-EI-2021-07Ministerio de Ciencia e Innovación PID2020-119403RBC21 BIOMIO+H2Ministerio de Ciencia e Innovación PRE2018-086477
6 · The paper itself

Abstract

backgroundShort-chain fatty acids (SCFAs) are cost-effective carbon sources for an affordable production of lipids. Hexanoic acid, the acid with the longest carbon chain in the SCFAs pool, is produced in anaerobic fermentation of organic residues and its use is very challenging, even inhibiting oleaginous yeasts growth.

resultsIn this investigation, an adaptive laboratory evolution (ALE) was performed to improve Yarrowia lipolytica ACA DC 50109 tolerance to high hexanoic acid concentrations. Following ALE, the transcriptomic analysis revealed several genetic adaptations that improved the assimilation of this carbon source in the evolved strain compared to the wild type (WT). Indeed, the evolved strain presented a high expression of the up-regulated gene YALI0 E16016g, which codes for FAT1 and is related to lipid droplets formation and responsible for mobilizing long-chain acids within the cell. Strikingly, acetic acid and other carbohydrate transporters were over-expressed in the WT strain.

conclusionsA more tolerant yeast strain able to attain higher lipid content under the presence of high concentrations of hexanoic acid has been obtained. Results provided novel information regarding the assimilation of hexanoic acid in yeasts.

Indexed as

YarrowiaAcidsCaproatesCarbonFatty AcidsFatty Acids, VolatileFermentationGene Expression ProfilingAcidsCaproatesCarbonFatty AcidsFatty Acids, Volatilehexanoic acidAdaptive laboratory evolutionHexanoic acidMicrobial oilsYarrowia lipolyticaYeast lipids

Identifiers

PMID38566056
PMCPMC10988856
OpenAlexW4393900200

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.